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Public Member Functions | Protected Member Functions | List of all members
bitpit::PointCloud Class Reference

The PointCloud class defines a point cloud. More...

Inheritance diagram for bitpit::PointCloud:
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Collaboration diagram for bitpit::PointCloud:
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Public Member Functions

 PointCloud (int dimension, MPI_Comm communicator)
 
 PointCloud (int id, int dimension, MPI_Comm communicator)
 
 PointCloud (MPI_Comm communicator)
 
 PointCloud (std::istream &stream, MPI_Comm communicator)
 
std::unique_ptr< PatchKernelclone () const override
 
long locatePoint (const std::array< double, 3 > &point) const override
 
- Public Member Functions inherited from bitpit::PointKernel
double evalCellSize (long id) const override
 
virtual std::array< double, 3 > evalPointsDirection (long id1, long id2) const
 
virtual double evalPointsDistance (long id1, long id2) const
 
int getLineCodimension () const override
 
int getPointCodimension () const override
 
int getSurfaceCodimension () const override
 
int getVolumeCodimension () const override
 
- Public Member Functions inherited from bitpit::PatchKernel
 PatchKernel (PatchKernel &&other)
 
virtual ~PatchKernel ()
 
std::vector< adaption::Infoadaption (bool trackAdaption=true, bool squeezeStorage=false)
 
std::vector< adaption::InfoadaptionAlter (bool trackAdaption=true, bool squeezeStorage=false)
 
void adaptionCleanup ()
 
std::vector< adaption::InfoadaptionPrepare (bool trackAdaption=true)
 
CellIterator addCell (Cell &&source, int owner, int haloLayer, long id=Element::NULL_ID)
 
CellIterator addCell (Cell &&source, int owner, long id=Element::NULL_ID)
 
CellIterator addCell (Cell &&source, long id=Element::NULL_ID)
 
CellIterator addCell (const Cell &source, int owner, int haloLayer, long id=Element::NULL_ID)
 
CellIterator addCell (const Cell &source, int owner, long id=Element::NULL_ID)
 
CellIterator addCell (const Cell &source, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, const std::vector< long > &connectivity, int owner, int haloLayer, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, const std::vector< long > &connectivity, int owner, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, int owner, int haloLayer, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, int owner, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, long id=Element::NULL_ID)
 
CellIterator addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID)
 
InterfaceIterator addInterface (const Interface &source, long id=Element::NULL_ID)
 
InterfaceIterator addInterface (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID)
 
InterfaceIterator addInterface (ElementType type, long id=Element::NULL_ID)
 
InterfaceIterator addInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID)
 
InterfaceIterator addInterface (Interface &&source, long id=Element::NULL_ID)
 
VertexIterator addVertex (const std::array< double, 3 > &coords, long id=Vertex::NULL_ID)
 
VertexIterator addVertex (const Vertex &source, long id=Vertex::NULL_ID)
 
VertexIterator addVertex (Vertex &&source, long id=Vertex::NULL_ID)
 
bool areAdjacenciesDirty (bool global=false) const
 
bool areInterfacesDirty (bool global=false) const
 
bool arePartitioningInfoDirty (bool global=true) const
 
void buildAdjacencies ()
 
void buildInterfaces ()
 
CellIterator cellBegin ()
 
CellConstIterator cellConstBegin () const
 
CellConstIterator cellConstEnd () const
 
CellIterator cellEnd ()
 
std::vector< long > collapseCoincidentVertices ()
 
void consecutiveRenumber (long offsetVertices, long offsetCells, long offsetInterfaces)
 
void consecutiveRenumberCells (long offset=0)
 
void consecutiveRenumberInterfaces (long offset=0)
 
void consecutiveRenumberVertices (long offset=0)
 
long countBorderCells () const
 
long countBorderFaces () const
 
long countBorderInterfaces () const
 
long countBorderVertices () const
 
long countDuplicateCells () const
 
long countFaces () const
 
long countFreeCells () const
 
long countFreeFaces () const
 
long countFreeInterfaces () const
 
long countFreeVertices () const
 
long countOrphanCells () const
 
long countOrphanInterfaces () const
 
long countOrphanVertices () const
 
bool deleteCell (long id)
 
template<typename IdStorage >
bool deleteCells (const IdStorage &ids)
 
bool deleteCoincidentVertices ()
 
bool deleteInterface (long id)
 
template<typename IdStorage >
bool deleteInterfaces (const IdStorage &ids)
 
bool deleteOrphanInterfaces ()
 
bool deleteOrphanVertices ()
 
void destroyAdjacencies ()
 
void destroyInterfaces ()
 
void displayCells (std::ostream &out, unsigned int padding=0) const
 
void displayInterfaces (std::ostream &out, unsigned int padding=0) const
 
void displayTopologyStats (std::ostream &out, unsigned int padding=0) const
 
void displayVertices (std::ostream &out, unsigned int padding=0) const
 
bool dump (std::ostream &stream)
 
bool dump (std::ostream &stream) const
 
bool empty (bool global=true) const
 
void enableCellBalancing (long id, bool enabled)
 
virtual void evalCellBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
 
virtual std::array< double, 3 > evalCellCentroid (long id) const
 
void evalElementBoundingBox (const Element &element, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
 
std::array< double, 3 > evalElementCentroid (const Element &element) const
 
virtual void evalInterfaceBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
 
virtual std::array< double, 3 > evalInterfaceCentroid (long id) const
 
double evalPartitioningUnbalance () const
 
double evalPartitioningUnbalance (const std::unordered_map< long, double > &cellWeights) const
 
void findCellEdgeNeighs (long id, bool complete, std::vector< long > *neighs) const
 
std::vector< long > findCellEdgeNeighs (long id, bool complete=true) const
 
std::vector< long > findCellEdgeNeighs (long id, int edge) const
 
void findCellEdgeNeighs (long id, int edge, std::vector< long > *neighs) const
 
std::vector< long > findCellFaceNeighs (long id) const
 
std::vector< long > findCellFaceNeighs (long id, int face) const
 
void findCellFaceNeighs (long id, int face, std::vector< long > *neighs) const
 
void findCellFaceNeighs (long id, std::vector< long > *neighs) const
 
std::vector< long > findCellNeighs (long id) const
 
void findCellNeighs (long id, int codimension, bool complete, std::vector< long > *neighs) const
 
std::vector< long > findCellNeighs (long id, int codimension, bool complete=true) const
 
void findCellNeighs (long id, std::vector< long > *neighs) const
 
void findCellVertexNeighs (long id, bool complete, std::vector< long > *neighs) const
 
std::vector< long > findCellVertexNeighs (long id, bool complete=true) const
 
std::vector< long > findCellVertexNeighs (long id, int vertex) const
 
void findCellVertexNeighs (long id, int vertex, std::vector< long > *neighs) const
 
std::vector< long > findCellVertexOneRing (long id, int vertex) const
 
void findCellVertexOneRing (long id, int vertex, std::vector< long > *neighs) const
 
std::vector< long > findDuplicateCells () const
 
bool findFaceNeighCell (long cellId, long neighId, int *cellFace, int *cellAdjacencyId) const
 
std::vector< long > findOrphanCells () const
 
std::vector< long > findOrphanInterfaces () const
 
std::vector< long > findOrphanVertices ()
 
std::vector< long > findVertexOneRing (long vertexId) const
 
void findVertexOneRing (long vertexId, std::vector< long > *ring) const
 
void flushData (std::fstream &stream, const std::string &name, VTKFormat format) override
 
AdaptionMode getAdaptionMode () const
 
AdaptionStatus getAdaptionStatus (bool global=false) const
 
AdjacenciesBuildStrategy getAdjacenciesBuildStrategy () const
 
void getBoundingBox (bool global, std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const
 
void getBoundingBox (std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const
 
CellgetCell (long id)
 
const CellgetCell (long id) const
 
adaption::Marker getCellAdaptionMarker (long id)
 
CellConstIterator getCellConstIterator (long id) const
 
virtual long getCellCount () const
 
int getCellHaloLayer (long id) const
 
CellIterator getCellIterator (long id)
 
int getCellOwner (long id) const
 
int getCellRank (long id) const
 
PiercedVector< Cell > & getCells ()
 
const PiercedVector< Cell > & getCells () const
 
virtual ElementType getCellType (long id) const
 
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > getCellVertexCoordinates (long id) const
 
void getCellVertexCoordinates (long id, std::array< double, 3 > *coordinates) const
 
void getCellVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
 
const MPI_Comm & getCommunicator () const
 
int getDimension () const
 
int getDumpVersion () const
 
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > getElementVertexCoordinates (const Element &element) const
 
void getElementVertexCoordinates (const Element &element, std::array< double, 3 > *coordinates) const
 
void getElementVertexCoordinates (const Element &element, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
 
CellgetFirstGhost ()
 
const CellgetFirstGhost () const
 
CellgetFirstGhostCell ()
 
const CellgetFirstGhostCell () const
 
VertexgetFirstGhostVertex ()
 
const VertexgetFirstGhostVertex () const
 
long getGhostCellCount () const
 
const std::unordered_map< int, std::vector< long > > & getGhostCellExchangeSources () const
 
const std::vector< long > & getGhostCellExchangeSources (int rank) const
 
const std::unordered_map< int, std::vector< long > > & getGhostCellExchangeTargets () const
 
const std::vector< long > & getGhostCellExchangeTargets (int rank) const
 
long getGhostCount () const
 
const std::unordered_map< int BITPIT_COMMA std::vector< long > > & getGhostExchangeSources () const
 
const std::vector< long > & getGhostExchangeSources (int rank) const
 
const std::unordered_map< int BITPIT_COMMA std::vector< long > > & getGhostExchangeTargets () const
 
const std::vector< long > & getGhostExchangeTargets (int rank) const
 
long getGhostVertexCount () const
 
const std::unordered_map< int, std::vector< long > > & getGhostVertexExchangeSources () const
 
const std::vector< long > & getGhostVertexExchangeSources (int rank) const
 
const std::unordered_map< int, std::vector< long > > & getGhostVertexExchangeTargets () const
 
const std::vector< long > & getGhostVertexExchangeTargets (int rank) const
 
std::size_t getHaloSize () const
 
int getId () const
 
InterfacegetInterface (long id)
 
const InterfacegetInterface (long id) const
 
InterfaceConstIterator getInterfaceConstIterator (long id) const
 
virtual long getInterfaceCount () const
 
InterfaceIterator getInterfaceIterator (long id)
 
PiercedVector< Interface > & getInterfaces ()
 
const PiercedVector< Interface > & getInterfaces () const
 
InterfacesBuildStrategy getInterfacesBuildStrategy () const
 
virtual ElementType getInterfaceType (long id) const
 
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > getInterfaceVertexCoordinates (long id) const
 
void getInterfaceVertexCoordinates (long id, std::array< double, 3 > *coordinates) const
 
void getInterfaceVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
 
long getInternalCellCount () const
 
std::set< int > getInternalCellPIDs ()
 
std::vector< long > getInternalCellsByPID (int pid)
 
long getInternalCount () const
 
long getInternalVertexCount () const
 
CellgetLastInternalCell ()
 
const CellgetLastInternalCell () const
 
VertexgetLastInternalVertex ()
 
const VertexgetLastInternalVertex () const
 
std::vector< int > getNeighbourRanks ()
 
int getOwner (bool allowDirty=false) const
 
PartitioningMode getPartitioningMode () const
 
PartitioningStatus getPartitioningStatus (bool global=false) const
 
int getProcessorCount () const
 
int getRank () const
 
double getTol () const
 
VertexgetVertex (long id)
 
const VertexgetVertex (long id) const
 
VertexConstIterator getVertexConstIterator (long id) const
 
const std::array< double, 3 > & getVertexCoords (long id) const
 
void getVertexCoords (std::size_t nVertices, const long *ids, std::array< double, 3 > *coordinates) const
 
void getVertexCoords (std::size_t nVertices, const long *ids, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
 
virtual long getVertexCount () const
 
VertexIterator getVertexIterator (long id)
 
int getVertexOwner (long id) const
 
int getVertexRank (long id) const
 
PiercedVector< Vertex > & getVertices ()
 
const PiercedVector< Vertex > & getVertices () const
 
VTKUnstructuredGridgetVTK ()
 
const VTKUnstructuredGridgetVTK () const
 
const CellConstRange getVTKCellWriteRange () const
 
WriteTarget getVTKWriteTarget () const
 
CellIterator ghostBegin ()
 
CellIterator ghostCell2InternalCell (long id)
 
CellIterator ghostCellBegin ()
 
CellConstIterator ghostCellConstBegin () const
 
CellConstIterator ghostCellConstEnd () const
 
CellIterator ghostCellEnd ()
 
CellConstIterator ghostConstBegin () const
 
CellConstIterator ghostConstEnd () const
 
CellIterator ghostEnd ()
 
VertexIterator ghostVertexBegin ()
 
VertexConstIterator ghostVertexConstBegin () const
 
VertexConstIterator ghostVertexConstEnd () const
 
VertexIterator ghostVertexEnd ()
 
void initializeAdjacencies (AdjacenciesBuildStrategy strategy=ADJACENCIES_AUTOMATIC)
 
void initializeInterfaces (InterfacesBuildStrategy strategy=INTERFACES_AUTOMATIC)
 
InterfaceIterator interfaceBegin ()
 
InterfaceConstIterator interfaceConstBegin () const
 
InterfaceConstIterator interfaceConstEnd () const
 
InterfaceIterator interfaceEnd ()
 
CellIterator internalBegin ()
 
CellIterator internalCell2GhostCell (long id, int owner, int haloLayer)
 
CellIterator internalCellBegin ()
 
CellConstIterator internalCellConstBegin () const
 
CellConstIterator internalCellConstEnd () const
 
CellIterator internalCellEnd ()
 
CellConstIterator internalConstBegin () const
 
CellConstIterator internalConstEnd () const
 
CellIterator internalEnd ()
 
VertexIterator internalVertexBegin ()
 
VertexConstIterator internalVertexConstBegin () const
 
VertexConstIterator internalVertexConstEnd () const
 
VertexIterator internalVertexEnd ()
 
bool isAdaptionSupported () const
 
bool isBoundingBoxDirty (bool global=false) const
 
bool isCellAutoIndexingEnabled () const
 
bool isDirty (bool global=false) const
 
bool isDistributed (bool allowDirty=false) const
 
bool isExpert () const
 
bool isInterfaceAutoIndexingEnabled () const
 
bool isInterfaceOrphan (long id) const
 
bool isPartitioned () const
 
bool isPartitioningSupported () const
 
bool isRankNeighbour (int rank)
 
bool isThreeDimensional () const
 
bool isTolCustomized () const
 
bool isVertexAutoIndexingEnabled () const
 
long locatePoint (double x, double y, double z) const
 
void markCellForCoarsening (long id)
 
void markCellForRefinement (long id)
 
PatchKerneloperator= (PatchKernel &&other)
 
std::vector< adaption::Infopartition (bool trackPartitioning, bool squeezeStorage=false)
 
std::vector< adaption::Infopartition (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false)
 
std::vector< adaption::Infopartition (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false)
 
std::vector< adaption::Infopartition (MPI_Comm communicator, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
 
std::vector< adaption::Infopartition (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
 
std::vector< adaption::Infopartition (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
 
std::vector< adaption::InfopartitioningAlter (bool trackPartitioning=true, bool squeezeStorage=false)
 
void partitioningCleanup ()
 
std::vector< adaption::InfopartitioningPrepare (bool trackPartitioning)
 
std::vector< adaption::InfopartitioningPrepare (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning)
 
std::vector< adaption::InfopartitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning)
 
std::vector< adaption::InfopartitioningPrepare (MPI_Comm communicator, bool trackPartitioning, std::size_t haloSize=1)
 
std::vector< adaption::InfopartitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, std::size_t haloSize=1)
 
std::vector< adaption::InfopartitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, std::size_t haloSize=1)
 
template<typename Function >
void processCellFaceNeighbours (long seedId, int nLayers, Function function) const
 
template<typename Selector , typename Function >
void processCellFaceNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const
 
template<typename Function >
void processCellNeighbours (long seedId, int nLayers, Function function) const
 
template<typename Selector , typename Function >
void processCellNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const
 
template<typename Function , typename SeedContainer >
void processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const
 
template<typename Selector , typename Function , typename SeedContainer >
void processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const
 
template<typename Function , typename SeedContainer >
void processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const
 
template<typename Selector , typename Function , typename SeedContainer >
void processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const
 
bool reserveCells (size_t nCells)
 
bool reserveInterfaces (size_t nInterfaces)
 
bool reserveVertices (size_t nVertices)
 
virtual void reset ()
 
void resetCellAdaptionMarker (long id)
 
virtual void resetCells ()
 
virtual void resetInterfaces ()
 
void resetTol ()
 
virtual void resetVertices ()
 
void restore (std::istream &stream, bool reregister=false)
 
virtual void rotate (const std::array< double, 3 > &n0, const std::array< double, 3 > &n1, double angle)
 
void rotate (double n0x, double n0y, double n0z, double n1x, double n1y, double n1z, double angle)
 
void scale (const std::array< double, 3 > &scaling)
 
virtual void scale (const std::array< double, 3 > &scaling, const std::array< double, 3 > &origin)
 
void scale (double scaling)
 
void scale (double scaling, const std::array< double, 3 > &origin)
 
void scale (double sx, double sy, double sz)
 
void scale (double sx, double sy, double sz, const std::array< double, 3 > &origin)
 
void setCellAutoIndexing (bool enabled)
 
virtual void setDimension (int dimension)
 
void setHaloSize (std::size_t haloSize)
 
void setId (int id)
 
void setInterfaceAutoIndexing (bool enabled)
 
virtual void settleAdaptionMarkers ()
 
void setTol (double tolerance)
 
void setVertexAutoIndexing (bool enabled)
 
void setVTKWriteTarget (WriteTarget targetCells)
 
virtual void simulateCellUpdate (const long id, adaption::Marker marker, std::vector< Cell > *virtualCells, PiercedVector< Vertex, long > *virtualVertices) const
 
bool sort ()
 
bool sortCells ()
 
bool sortInterfaces ()
 
bool sortVertices ()
 
bool squeeze ()
 
bool squeezeCells ()
 
bool squeezeInterfaces ()
 
bool squeezeVertices ()
 
virtual void translate (const std::array< double, 3 > &translation)
 
void translate (double sx, double sy, double sz)
 
std::vector< adaption::Infoupdate (bool trackAdaption=true, bool squeezeStorage=false)
 
void updateAdjacencies (bool forcedUpdated=false)
 
void updateBoundingBox (bool forcedUpdated=false)
 
void updateInterfaces (bool forcedUpdated=false)
 
VertexIterator vertexBegin ()
 
VertexConstIterator vertexConstBegin () const
 
VertexConstIterator vertexConstEnd () const
 
VertexIterator vertexEnd ()
 
void write (const std::string &name, VTKWriteMode mode, double time)
 
void write (const std::string &name, VTKWriteMode mode=VTKWriteMode::DEFAULT)
 
void write (VTKWriteMode mode, double time)
 
void write (VTKWriteMode mode=VTKWriteMode::DEFAULT)
 
- Public Member Functions inherited from bitpit::VTKBaseStreamer
virtual void absorbData (std::fstream &, const std::string &, VTKFormat, uint64_t, uint8_t, VTKDataType)
 
template<typename T >
void flushValue (std::fstream &, VTKFormat, const T &value) const
 
template<typename T >
void flushValue (std::fstream &, VTKFormat, const T *values, int nValues) const
 

Protected Member Functions

 PointCloud (const PointCloud &other)=default
 
void _dump (std::ostream &stream) const override
 
int _getDumpVersion () const override
 
void _restore (std::istream &stream) override
 
- Protected Member Functions inherited from bitpit::PointKernel
 PointKernel (int dimension, MPI_Comm communicator, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
 PointKernel (int id, int dimension, MPI_Comm communicator, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
 PointKernel (MPI_Comm communicator, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
- Protected Member Functions inherited from bitpit::PatchKernel
 PatchKernel (const PatchKernel &other)
 
 PatchKernel (int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
 PatchKernel (int id, int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
 PatchKernel (MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
 
virtual std::vector< adaption::Info_adaptionAlter (bool trackAdaption)
 
virtual void _adaptionCleanup ()
 
virtual std::vector< adaption::Info_adaptionPrepare (bool trackAdaption)
 
virtual bool _enableCellBalancing (long id, bool enabled)
 
virtual void _findCellEdgeNeighs (long id, int edge, const std::vector< long > *blackList, std::vector< long > *neighs) const
 
virtual void _findCellFaceNeighs (long id, int face, const std::vector< long > *blackList, std::vector< long > *neighs) const
 
virtual void _findCellNeighs (long id, const std::vector< long > *blackList, std::vector< long > *neighs) const
 
virtual void _findCellVertexNeighs (long id, int vertex, const std::vector< long > *blackList, std::vector< long > *neighs) const
 
virtual std::vector< long > _findGhostCellExchangeSources (int rank)
 
virtual adaption::Marker _getCellAdaptionMarker (long id)
 
virtual long _getCellNativeIndex (long id) const
 
virtual std::size_t _getMaxHaloSize ()
 
virtual bool _markCellForCoarsening (long id)
 
virtual bool _markCellForRefinement (long id)
 
virtual std::vector< adaption::Info_partitioningAlter (bool trackPartitioning)
 
virtual void _partitioningCleanup ()
 
virtual std::vector< adaption::Info_partitioningPrepare (const std::unordered_map< long, double > &cellWeights, double defaultWeight, bool trackPartitioning)
 
virtual std::vector< adaption::Info_partitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning)
 
virtual void _resetAdjacencies (bool release)
 
virtual bool _resetCellAdaptionMarker (long id)
 
virtual void _resetInterfaces (bool release)
 
virtual void _resetTol ()
 
virtual void _setHaloSize (std::size_t haloSize)
 
virtual void _setTol (double tolerance)
 
virtual void _updateAdjacencies ()
 
virtual void _updateInterfaces ()
 
virtual void _writeFinalize ()
 
virtual void _writePrepare ()
 
void addPointToBoundingBox (const std::array< double, 3 > &point)
 
std::unordered_map< long, std::vector< long > > binGroupVertices (const PiercedVector< Vertex > &vertices, int nBins)
 
std::unordered_map< long, std::vector< long > > binGroupVertices (int nBins)
 
void clearBoundingBox ()
 
template<typename item_t , typename id_t = long>
std::unordered_map< id_t, id_t > consecutiveItemRenumbering (PiercedVector< item_t, id_t > &container, long offset)
 
bool deleteVertex (long id)
 
template<typename IdStorage >
bool deleteVertices (const IdStorage &ids)
 
void dumpCells (std::ostream &stream) const
 
void dumpInterfaces (std::ostream &stream) const
 
void dumpVertices (std::ostream &stream) const
 
void extractEnvelope (PatchKernel &envelope) const
 
virtual int findAdjoinNeighFace (const Cell &cell, int cellFace, const Cell &neigh) const
 
AlterationFlags getCellAlterationFlags (long id) const
 
AlterationFlags getInterfaceAlterationFlags (long id) const
 
VertexIterator ghostVertex2InternalVertex (long id)
 
VertexIterator internalVertex2GhostVertex (long id, int owner)
 
bool isBoundingBoxFrozen () const
 
bool isCommunicatorSet () const
 
virtual bool isSameFace (const Cell &cell_A, int face_A, const Cell &cell_B, int face_B) const
 
template<typename item_t , typename id_t = long>
void mappedItemRenumbering (PiercedVector< item_t, id_t > &container, const std::unordered_map< id_t, id_t > &renumberMap)
 
PatchKerneloperator= (const PatchKernel &other)=delete
 
void pruneStaleAdjacencies ()
 
void pruneStaleInterfaces ()
 
void removePointFromBoundingBox (const std::array< double, 3 > &point)
 
void resetAdjacencies ()
 
void resetCellAlterationFlags (long id, AlterationFlags flags=FLAG_NONE)
 
void resetInterfaceAlterationFlags (long id, AlterationFlags flags=FLAG_NONE)
 
CellIterator restoreCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id)
 
void restoreCells (std::istream &stream)
 
InterfaceIterator restoreInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id)
 
void restoreInterfaces (std::istream &stream)
 
VertexIterator restoreVertex (const std::array< double, 3 > &coords, int owner, long id)
 
void restoreVertices (std::istream &stream)
 
void setAdaptionMode (AdaptionMode mode)
 
void setAdaptionStatus (AdaptionStatus status)
 
void setAdjacenciesBuildStrategy (AdjacenciesBuildStrategy status)
 
void setBoundingBox (const std::array< double, 3 > &minPoint, const std::array< double, 3 > &maxPoint)
 
void setBoundingBoxDirty (bool dirty)
 
void setBoundingBoxFrozen (bool frozen)
 
void setCellAlterationFlags (AlterationFlags flags)
 
void setCellAlterationFlags (long id, AlterationFlags flags)
 
virtual void setCommunicator (MPI_Comm communicator)
 
void setExpert (bool expert)
 
void setInterfaceAlterationFlags (AlterationFlags flags)
 
void setInterfaceAlterationFlags (long id, AlterationFlags flags)
 
void setInterfacesBuildStrategy (InterfacesBuildStrategy status)
 
void setPartitioned (bool partitioned)
 
void setPartitioningMode (PartitioningMode mode)
 
void setPartitioningStatus (PartitioningStatus status)
 
bool testAlterationFlags (AlterationFlags availableFlags, AlterationFlags requestedFlags) const
 
bool testCellAlterationFlags (long id, AlterationFlags flags) const
 
bool testInterfaceAlterationFlags (long id, AlterationFlags flags) const
 
void unsetCellAlterationFlags (AlterationFlags flags)
 
void unsetCellAlterationFlags (long id, AlterationFlags flags)
 
void unsetInterfaceAlterationFlags (AlterationFlags flags)
 
void unsetInterfaceAlterationFlags (long id, AlterationFlags flags)
 
void updateFirstGhostCellId ()
 
void updateFirstGhostVertexId ()
 
void updateLastInternalCellId ()
 
void updateLastInternalVertexId ()
 

Additional Inherited Members

- Public Types inherited from bitpit::PatchKernel
enum  AdaptionMode { ADAPTION_DISABLED = -1 , ADAPTION_AUTOMATIC , ADAPTION_MANUAL }
 
enum  AdaptionStatus { ADAPTION_CLEAN , ADAPTION_DIRTY , ADAPTION_PREPARED , ADAPTION_ALTERED }
 
enum  AdjacenciesBuildStrategy { ADJACENCIES_NONE = -1 , ADJACENCIES_AUTOMATIC }
 
typedef PiercedVector< Cell >::const_iterator CellConstIterator
 
typedef PiercedVector< Cell >::const_range CellConstRange
 
typedef PiercedVector< Cell >::iterator CellIterator
 
typedef PiercedVector< Cell >::range CellRange
 
typedef PiercedVector< Interface >::const_iterator InterfaceConstIterator
 
typedef PiercedVector< Interface >::const_range InterfaceConstRange
 
typedef PiercedVector< Interface >::iterator InterfaceIterator
 
typedef PiercedVector< Interface >::range InterfaceRange
 
enum  InterfacesBuildStrategy { INTERFACES_NONE = -1 , INTERFACES_AUTOMATIC }
 
enum  PartitioningMode { PARTITIONING_DISABLED = -1 , PARTITIONING_ENABLED }
 
enum  PartitioningStatus { PARTITIONING_CLEAN , PARTITIONING_PREPARED , PARTITIONING_ALTERED }
 
typedef PiercedVector< Vertex >::const_iterator VertexConstIterator
 
typedef PiercedVector< Vertex >::const_range VertexConstRange
 
typedef PiercedVector< Vertex >::iterator VertexIterator
 
typedef PiercedVector< Vertex >::range VertexRange
 
enum  WriteTarget { WRITE_TARGET_CELLS_ALL , WRITE_TARGET_CELLS_INTERNAL }
 
- Static Public Member Functions inherited from bitpit::PatchKernel
template<typename patch_t >
static std::unique_ptr< patch_t > clone (const patch_t *original)
 
- Protected Types inherited from bitpit::PatchKernel
typedef uint16_t AlterationFlags
 
typedef std::unordered_map< long, AlterationFlags > AlterationFlagsStorage
 
- Protected Attributes inherited from bitpit::PatchKernel
AlterationFlagsStorage m_alteredCells
 
AlterationFlagsStorage m_alteredInterfaces
 
PiercedVector< Cellm_cells
 
PiercedVector< Interfacem_interfaces
 
PiercedVector< Vertexm_vertices
 
- Static Protected Attributes inherited from bitpit::PatchKernel
static const double DEFAULT_PARTITIONING_WEIGTH = 1.
 
static const AlterationFlags FLAG_ADJACENCIES_DIRTY = (1u << 1)
 
static const AlterationFlags FLAG_DANGLING = (1u << 3)
 
static const AlterationFlags FLAG_DELETED = (1u << 0)
 
static const AlterationFlags FLAG_INTERFACES_DIRTY = (1u << 2)
 
static const AlterationFlags FLAG_NONE = 0x0
 

Detailed Description

The PointCloud class defines a point cloud.

PointCloud defines a point cloud.

Definition at line 36 of file pointcloud.hpp.

Constructor & Destructor Documentation

◆ PointCloud() [1/4]

bitpit::PointCloud::PointCloud ( MPI_Comm communicator)

Creates an uninitialized partitioned patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters
communicatoris the communicator to be used for exchanging data among the processes

Definition at line 51 of file pointcloud.cpp.

◆ PointCloud() [2/4]

bitpit::PointCloud::PointCloud ( int dimension,
MPI_Comm communicator )

Creates a patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters
dimensionis the dimension of the patch
communicatoris the communicator to be used for exchanging data among the processes

Definition at line 75 of file pointcloud.cpp.

◆ PointCloud() [3/4]

bitpit::PointCloud::PointCloud ( int id,
int dimension,
MPI_Comm communicator )

Creates a patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters
idis the id of the patch
dimensionis the dimension of the patch
communicatoris the communicator to be used for exchanging data among the processes

Definition at line 102 of file pointcloud.cpp.

◆ PointCloud() [4/4]

bitpit::PointCloud::PointCloud ( std::istream & stream,
MPI_Comm communicator )

Creates a patch restoring the patch saved in the specified stream.

The number of processes in the communicator should be equal to the number of processes of the communicator used when dumping the patch.

Parameters
streamis the stream to read from
communicatoris the communicator to be used for exchanging data among the processes

Definition at line 128 of file pointcloud.cpp.

Member Function Documentation

◆ _dump()

void bitpit::PointCloud::_dump ( std::ostream & stream) const
overrideprotectedvirtual

Write the patch to the specified stream.

Parameters
streamis the stream to write to

Implements bitpit::PatchKernel.

Definition at line 171 of file pointcloud.cpp.

◆ _getDumpVersion()

int bitpit::PointCloud::_getDumpVersion ( ) const
overrideprotectedvirtual

Get the version associated to the binary dumps.

Returns
The version associated to the binary dumps.

Implements bitpit::PatchKernel.

Definition at line 159 of file pointcloud.cpp.

◆ _restore()

void bitpit::PointCloud::_restore ( std::istream & stream)
overrideprotectedvirtual

Restore the patch from the specified stream.

Parameters
streamis the stream to read from

Implements bitpit::PatchKernel.

Definition at line 195 of file pointcloud.cpp.

◆ clone()

std::unique_ptr< PatchKernel > bitpit::PointCloud::clone ( ) const
overridevirtual

Creates a clone of the pach.

Returns
A clone of the pach.

Implements bitpit::PatchKernel.

Definition at line 149 of file pointcloud.cpp.

◆ locatePoint()

long bitpit::PointCloud::locatePoint ( const std::array< double, 3 > & point) const
overridevirtual

Locates the cell the contains the point.

If the point is not inside the patch, the function returns the id of the null element.

NOTE: this function is not implemented yet.

Parameters
[in]pointis the point to be checked
Returns
Returns the linear id of the cell the contains the point. If the point is not inside the patch, the function returns the id of the null element.

Implements bitpit::PatchKernel.

Definition at line 227 of file pointcloud.cpp.


The documentation for this class was generated from the following files:
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