PABLO Uniform is an example of user class derived from ParaTree to map ParaTree in a uniform (square/cubic) domain. Pablo Uniform takes as input in constructor the coordinates of the origin (X,Y,Z) and the length of the side L. More...

#include <PabloUniform.hpp>

Inheritance diagram for bitpit::PabloUniform:

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Collaboration diagram for bitpit::PabloUniform:

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Public Member Functions
	PabloUniform (const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

	PabloUniform (double X, double Y, double Z, double L, uint8_t dim=2, const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

	PabloUniform (uint8_t dim, const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

void	dump (std::ostream &stream, bool full=true) override

double	getArea (const Intersection *inter) const

double	getArea (const Octant *oct) const

double	getArea (uint32_t idx) const

void	getBoundingBox (darray3 &P0, darray3 &P1) const

darray3	getCenter (const Intersection *inter) const

darray3	getCenter (const Octant *oct) const

void	getCenter (const Octant *oct, darray3 &center) const

darray3	getCenter (uint32_t idx) const

void	getCenter (uint32_t idx, darray3 &center) const

darray3	getCoordinates (const Octant *oct) const

darray3	getCoordinates (uint32_t idx) const

int	getDumpVersion () const override

darray3	getFaceCenter (const Octant *oct, uint8_t iface) const

void	getFaceCenter (const Octant *oct, uint8_t iface, darray3 &center) const

darray3	getFaceCenter (uint32_t idx, uint8_t iface) const

void	getFaceCenter (uint32_t idx, uint8_t iface, darray3 &center) const

double	getL () const

double	getLocalMaxSize () const

double	getLocalMinSize () const

darray3	getNode (const Octant *oct, uint8_t inode) const

void	getNode (const Octant *oct, uint8_t inode, darray3 &node) const

darray3	getNode (uint32_t idx, uint8_t inode) const

void	getNode (uint32_t idx, uint8_t inode, darray3 &node) const

darray3	getNodeCoordinates (uint32_t inode) const

darr3vector	getNodes (const Intersection *inter) const

darr3vector	getNodes (const Octant *oct) const

void	getNodes (const Octant *oct, darr3vector &nodes) const

darr3vector	getNodes (uint32_t idx) const

void	getNodes (uint32_t idx, darr3vector &nodes) const

darray3	getNormal (const Intersection *inter) const

darray3	getNormal (const Octant *oct, uint8_t iface) const

void	getNormal (const Octant *oct, uint8_t iface, darray3 &normal) const

darray3	getNormal (uint32_t idx, uint8_t iface) const

void	getNormal (uint32_t idx, uint8_t iface, darray3 &normal) const

darray3	getOrigin () const

Octant *	getPointOwner (darray3 point)

Octant *	getPointOwner (darray3 point, bool &isghost)

uint32_t	getPointOwnerIdx (darray3 point) const

uint32_t	getPointOwnerIdx (darray3 point, bool &isghost) const

int	getPointOwnerRank (darray3 point)

double	getSize (const Intersection *inter) const

double	getSize (const Octant *oct) const

double	getSize (uint32_t idx) const

double	getVolume (const Octant *oct) const

double	getVolume (uint32_t idx) const

double	getX (const Octant *oct) const

double	getX (uint32_t idx) const

double	getX0 () const

double	getY (const Octant *oct) const

double	getY (uint32_t idx) const

double	getY0 () const

double	getZ (const Octant *oct) const

double	getZ (uint32_t idx) const

double	getZ0 () const

double	levelToSize (uint8_t level) const

void	reset () override

void	restore (std::istream &stream) override

void	setL (double L)

void	setOrigin (const darray3 &origin)

void	write (const std::string &filename)

void	writeTest (const std::string &filename, dvector data)

Public Member Functions inherited from bitpit::ParaTree
	ParaTree (const ParaTree &other)

	ParaTree (const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

	ParaTree (std::istream &stream, const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

	ParaTree (uint8_t dim, const std::string &logfile=DEFAULT_LOG_FILE, MPI_Comm comm=MPI_COMM_WORLD)

virtual	~ParaTree ()

bool	adapt (bool mapper_flag=false)

bool	adaptGlobalCoarse (bool mapper_flag=false)

bool	adaptGlobalRefine (bool mapper_flag=false)

bool	check21Balance ()

bool	checkToAdapt ()

void	clearConnectivity (bool release=true)

template<class Impl >
void	communicate (DataCommInterface< Impl > &userData)

void	computeConnectivity ()

void	computeIntersections ()

uint64_t	computeNodePersistentKey (const Octant *oct, uint8_t node) const

uint64_t	computeNodePersistentKey (uint32_t idx, uint8_t node) const

LoadBalanceRanges	evalLoadBalanceRanges (dvector *weights)

LoadBalanceRanges	evalLoadBalanceRanges (uint8_t level, dvector *weights)

void	expectedOctantAdapt (const Octant octant, int8_t marker, octvector result) const

void	findAllCodimensionNeighbours (const Octant *oct, u32vector &neighbours, bvector &isghost)

void	findAllCodimensionNeighbours (uint32_t idx, u32vector &neighbours, bvector &isghost)

void	findAllNodeNeighbours (const Octant *oct, uint32_t node, u32vector &neighbours, bvector &isghost) const

void	findAllNodeNeighbours (uint32_t idx, uint32_t node, u32vector &neighbours, bvector &isghost)

void	findGhostAllCodimensionNeighbours (Octant *oct, u32vector &neighbours, bvector &isghost)

void	findGhostAllCodimensionNeighbours (uint32_t idx, u32vector &neighbours, bvector &isghost)

void	findGhostNeighbours (const Octant *oct, uint8_t face, uint8_t codim, u32vector &neighbours, bvector &isghost) const

void	findGhostNeighbours (uint32_t idx, uint8_t face, uint8_t codim, u32vector &neighbours) const

void	findGhostNeighbours (uint32_t idx, uint8_t face, uint8_t codim, u32vector &neighbours, bvector &isghost) const

void	findNeighbours (const Octant *oct, uint8_t face, uint8_t codim, u32vector &neighbours, bvector &isghost) const

void	findNeighbours (uint32_t idx, uint8_t face, uint8_t codim, u32vector &neighbours) const

void	findNeighbours (uint32_t idx, uint8_t face, uint8_t codim, u32vector &neighbours, bvector &isghost) const

int	findOwner (uint64_t morton) const

void	freeComm ()

double	getArea (const Intersection *inter) const

double	getArea (const Octant *oct) const

double	getArea (uint32_t idx) const

bool	getBalance (const Octant *oct) const

bool	getBalance (uint32_t idx) const

uint8_t	getBalanceCodimension () const

const std::map< int, std::vector< uint32_t > > &	getBordersPerProc () const

bool	getBound (const Intersection *inter) const

bool	getBound (const Octant *oct) const

bool	getBound (const Octant *oct, uint8_t face) const

bool	getBound (uint32_t idx) const

bool	getBound (uint32_t idx, uint8_t face) const

darray3	getCenter (const Intersection *inter) const

darray3	getCenter (const Octant *oct) const

void	getCenter (const Octant *oct, darray3 &centerCoords) const

darray3	getCenter (uint32_t idx) const

void	getCenter (uint32_t idx, darray3 &centerCoords) const

MPI_Comm	getComm () const

const u32vector2D &	getConnectivity () const

const u32vector &	getConnectivity (Octant *oct) const

const u32vector &	getConnectivity (uint32_t idx) const

darray3	getCoordinates (const Octant *oct) const

darray3	getCoordinates (uint32_t idx) const

uint8_t	getDim () const

const int8_t(*	getEdgecoeffs () const)[3]

void	getEdgecoeffs (int8_t edgecoeffs[12][3]) const

const uint8_t(*	getEdgeface () const)[2]

void	getEdgeface (uint8_t edgeface[12][2]) const

uint8_t	getFace (const Intersection *inter) const

darray3	getFaceCenter (const Octant *oct, uint8_t face) const

void	getFaceCenter (const Octant *oct, uint8_t face, darray3 &centerCoords) const

darray3	getFaceCenter (uint32_t idx, uint8_t face) const

void	getFaceCenter (uint32_t idx, uint8_t face, darray3 &centerCoords) const

const uint8_t(*	getFacenode () const)[4]

void	getFacenode (uint8_t facenode[6][4]) const

uint8_t	getFamilySplittingNode (const Octant *) const

bool	getFiner (const Intersection *inter) const

uint64_t	getFirstDescMorton () const

const u32vector2D &	getGhostConnectivity () const

const u32vector &	getGhostConnectivity (const Octant *oct) const

const u32vector &	getGhostConnectivity (uint32_t idx) const

uint64_t	getGhostGlobalIdx (uint32_t idx) const

int	getGhostLayer (const Octant *oct) const

uint32_t	getGhostLocalIdx (uint64_t gidx) const

Octant *	getGhostOctant (uint32_t idx)

const Octant *	getGhostOctant (uint32_t idx) const

uint64_t	getGlobalIdx (const Octant *oct) const

uint64_t	getGlobalIdx (uint32_t idx) const

uint64_t	getGlobalNumOctants () const

uint32_t	getIdx (const Octant *oct) const

uint32_t	getIn (const Intersection *inter) const

octantIterator	getInternalOctantsBegin ()

octantIterator	getInternalOctantsEnd ()

Intersection *	getIntersection (uint32_t idx)

bool	getIsGhost (const Intersection *inter) const

bool	getIsGhost (const Octant *oct) const

bool	getIsNewC (const Octant *oct) const

bool	getIsNewC (uint32_t idx) const

bool	getIsNewR (const Octant *oct) const

bool	getIsNewR (uint32_t idx) const

double	getL () const

uint64_t	getLastDescMorton () const

uint64_t	getLastDescMorton (const Octant *oct) const

uint64_t	getLastDescMorton (uint32_t idx) const

Operation	getLastOperation () const

uint8_t	getLevel (const Intersection *inter) const

uint8_t	getLevel (const Octant *oct) const

uint8_t	getLevel (uint32_t idx) const

const LoadBalanceRanges &	getLoadBalanceRanges () const

uint32_t	getLocalIdx (uint64_t gidx) const

uint32_t	getLocalIdx (uint64_t gidx, int rank) const

void	getLocalIdx (uint64_t gidx, uint32_t &lidx, int &rank) const

uint8_t	getLocalMaxDepth () const

double	getLocalMaxSize () const

double	getLocalMinSize () const

Logger &	getLog ()

void	getMapping (uint32_t idx, u32vector &mapper, bvector &isghost) const

void	getMapping (uint32_t idx, u32vector &mapper, bvector &isghost, ivector &rank) const

int8_t	getMarker (const Octant *oct) const

int8_t	getMarker (uint32_t idx) const

int8_t	getMaxDepth () const

uint32_t	getMaxLength () const

int	getMaxLevel () const

uint64_t	getMorton (const Octant *oct) const

uint64_t	getMorton (uint32_t idx) const

uint8_t	getNchildren () const

uint8_t	getNedges () const

uint8_t	getNfaces () const

uint8_t	getNnodes () const

uint8_t	getNnodesperface () const

darray3	getNode (const Octant *oct, uint8_t node) const

void	getNode (const Octant *oct, uint8_t node, darray3 &nodeCoords) const

darray3	getNode (uint32_t idx, uint8_t node) const

void	getNode (uint32_t idx, uint8_t node, darray3 &nodeCoords) const

const int8_t(*	getNodecoeffs () const)[3]

void	getNodecoeffs (int8_t nodecoeffs[8][3]) const

darray3	getNodeCoordinates (uint32_t node) const

const uint8_t(*	getNodeface () const)[3]

void	getNodeface (uint8_t nodeface[8][3]) const

const u32array3 &	getNodeLogicalCoordinates (uint32_t node) const

const u32arr3vector &	getNodes () const

darr3vector	getNodes (const Intersection *inter) const

darr3vector	getNodes (const Octant *oct) const

void	getNodes (const Octant *oct, darr3vector &nodesCoords) const

darr3vector	getNodes (uint32_t idx) const

void	getNodes (uint32_t idx, darr3vector &nodesCoords) const

std::size_t	getNofGhostLayers () const

darray3	getNormal (const Intersection *inter) const

darray3	getNormal (const Octant *oct, uint8_t face) const

void	getNormal (const Octant *oct, uint8_t face, darray3 &normal) const

darray3	getNormal (uint32_t idx, uint8_t face) const

void	getNormal (uint32_t idx, uint8_t face, darray3 &normal) const

const int8_t(*	getNormals () const)[3]

void	getNormals (int8_t normals[6][3]) const

int	getNproc () const

uint32_t	getNumGhosts () const

uint32_t	getNumIntersections () const

uint32_t	getNumNodes () const

uint32_t	getNumOctants () const

Octant *	getOctant (uint32_t idx)

const Octant *	getOctant (uint32_t idx) const

const uint8_t *	getOppface () const

void	getOppface (uint8_t oppface[6]) const

darray3	getOrigin () const

uint32_t	getOut (const Intersection *inter) const

bool	getOutIsGhost (const Intersection *inter) const

int	getOwnerRank (uint64_t globalIdx) const

u32vector	getOwners (const Intersection *inter) const

bool	getParallel () const

const std::vector< uint64_t > &	getPartitionFirstDesc () const

const std::vector< uint64_t > &	getPartitionLastDesc () const

const std::vector< uint64_t > &	getPartitionRangeGlobalIdx () const

bool	getPbound (const Intersection *inter) const

bool	getPbound (const Octant *oct) const

bool	getPbound (const Octant *oct, uint8_t face) const

bool	getPbound (uint32_t idx) const

bool	getPbound (uint32_t idx, uint8_t face) const

octantIterator	getPboundOctantsBegin ()

octantIterator	getPboundOctantsEnd ()

bvector	getPeriodic () const

bool	getPeriodic (uint8_t i) const

octantID	getPersistentIdx (const Octant *oct) const

octantID	getPersistentIdx (uint32_t idx) const

Octant *	getPointOwner (const darray3 &point)

Octant *	getPointOwner (const darray3 &point, bool &isghost)

Octant *	getPointOwner (const dvector &point)

Octant *	getPointOwner (const dvector &point, bool &isghost)

uint32_t	getPointOwnerIdx (const darray3 &point) const

uint32_t	getPointOwnerIdx (const darray3 &point, bool &isghost) const

uint32_t	getPointOwnerIdx (const double *point) const

uint32_t	getPointOwnerIdx (const double *point, bool &isghost) const

uint32_t	getPointOwnerIdx (const dvector &point) const

uint32_t	getPointOwnerIdx (const dvector &point, bool &isghost) const

int	getPointOwnerRank (const darray3 &point)

void	getPreMapping (u32vector &idx, std::vector< int8_t > &markers, std::vector< bool > &isghost)

int8_t	getPreMarker (Octant *oct)

int8_t	getPreMarker (uint32_t idx)

int	getRank () const

bool	getSerial () const

double	getSize (const Intersection *inter) const

double	getSize (const Octant *oct) const

double	getSize (uint32_t idx) const

uint64_t	getStatus () const

double	getTol () const

double	getVolume (const Octant *oct) const

double	getVolume (uint32_t idx) const

double	getX (const Octant *oct) const

double	getX (uint32_t idx) const

double	getX0 () const

double	getY (const Octant *oct) const

double	getY (uint32_t idx) const

double	getY0 () const

double	getZ (const Octant *oct) const

double	getZ (uint32_t idx) const

double	getZ0 () const

bool	isCommSet () const

bool	isEdgeOnOctant (const Octant edgeOctant, uint8_t edgeIndex, const Octant octant) const

bool	isFaceOnOctant (const Octant faceOctant, uint8_t faceIndex, const Octant octant) const

bool	isNodeOnOctant (const Octant nodeOctant, uint8_t nodeIndex, const Octant octant) const

double	levelToSize (uint8_t level) const

void	loadBalance (const dvector *weight=NULL)

template<class Impl >
void	loadBalance (DataLBInterface< Impl > &userData, dvector *weight=NULL)

template<class Impl >
void	loadBalance (DataLBInterface< Impl > &userData, uint8_t &level, dvector *weight=NULL)

void	loadBalance (uint8_t &level, const dvector *weight=NULL)

void	preadapt ()

void	printHeader ()

template<class Impl >
void	privateLoadBalance (const uint32_t partition, DataLBInterface< Impl > userData=nullptr)

void	replaceComm (MPI_Comm communicator, MPI_Comm *previousCommunicator=nullptr)

void	setBalance (Octant *oct, bool balance)

void	setBalance (uint32_t idx, bool balance)

void	setBalanceCodimension (uint8_t b21codim)

void	setComm (MPI_Comm communicator)

void	setMarker (Octant *oct, int8_t marker)

void	setMarker (uint32_t idx, int8_t marker)

void	setNofGhostLayers (std::size_t nofGhostLayers)

void	setPeriodic (uint8_t i)

void	settleMarkers ()

void	setTol (double tol=1.0e-14)

void	updateConnectivity ()

void	write (const std::string &filename)

void	writeTest (const std::string &filename, dvector data)

Additional Inherited Members
Public Types inherited from bitpit::ParaTree
typedef std::unordered_map< int, std::array< uint32_t, 2 > >	ExchangeRanges

enum	Operation { OP_NONE , OP_INIT , OP_PRE_ADAPT , OP_ADAPT_MAPPED , OP_ADAPT_UNMAPPED , OP_LOADBALANCE_FIRST , OP_LOADBALANCE }

Static Public Attributes inherited from bitpit::ParaTree
static BITPIT_PUBLIC_API const std::string	DEFAULT_LOG_FILE = "PABLO"

Detailed Description

PABLO Uniform is an example of user class derived from ParaTree to map ParaTree in a uniform (square/cubic) domain. Pablo Uniform takes as input in constructor the coordinates of the origin (X,Y,Z) and the length of the side L.

Date: 25/jan/2016

Authors: Edoardo Lombardi; Marco Cisternino

Class PabloUniform has a dimensional parameter int dim and it accepts only two values: dim=2 and dim=3, for 2D and 3D respectively.

Examples: PABLO_bubbles_2D.cpp, PABLO_bubbles_3D.cpp, PABLO_example_00001.cpp, PABLO_example_00002.cpp, PABLO_example_00003.cpp, PABLO_example_00004.cpp, PABLO_example_00005.cpp, PABLO_example_00006.cpp, PABLO_example_00007.cpp, PABLO_example_00008.cpp, PABLO_example_00009.cpp, PABLO_example_00010.cpp, and PABLO_example_00011.cpp.

Definition at line 61 of file PabloUniform.hpp.

Constructor & Destructor Documentation

◆ PabloUniform() [1/3]

bitpit::PabloUniform::PabloUniform	(	const std::string &	logfile = DEFAULT_LOG_FILE,
		MPI_Comm	comm = MPI_COMM_WORLD )

Default empty constructor of PabloUniform.

Parameters

[in]	logfile	The file name for the log of this object. PABLO.log is the default value.
[in]	comm	The MPI communicator used by the parallel octree. MPI_COMM_WORLD is the default value.

Definition at line 53 of file PabloUniform.cpp.

◆ PabloUniform() [2/3]

bitpit::PabloUniform::PabloUniform	(	uint8_t	dim,
		const std::string &	logfile = DEFAULT_LOG_FILE,
		MPI_Comm	comm = MPI_COMM_WORLD )

Default constructor of PabloUniform. It sets the Origin in (0,0,0) and side of length 1.

Parameters

[in]	dim	The space dimension of the octree.
[in]	logfile	The file name for the log of this object. PABLO.log is the default value.
[in]	comm	The MPI communicator used by the parallel octree. MPI_COMM_WORLD is the default value.

Definition at line 69 of file PabloUniform.cpp.

◆ PabloUniform() [3/3]

bitpit::PabloUniform::PabloUniform	(	double	X,
		double	Y,
		double	Z,
		double	L,
		uint8_t	dim = 2,
		const std::string &	logfile = DEFAULT_LOG_FILE,
		MPI_Comm	comm = MPI_COMM_WORLD )

Custom constructor of PabloUniform. It sets the Origin in (X,Y,Z) and side of length L.

Parameters

[in]	X	x-coordinate of the origin in physical domain,
[in]	Y	y-coordinate of the origin in physical domain,
[in]	Z	z-coordinate of the origin in physical domain,
[in]	L	Length of the side in physical domain.
[in]	dim	The space dimension of the octree.
[in]	logfile	The file name for the log of this object. PABLO.log is the default value.
[in]	comm	The MPI communicator used by the parallel octree. MPI_COMM_WORLD is the default value.

Definition at line 89 of file PabloUniform.cpp.

Member Function Documentation

◆ dump()

void bitpit::PabloUniform::dump	(	std::ostream &	stream,
		bool	full = true )

overridevirtual

Write the octree to the specified stream.

Parameters

stream	is the stream to write to
full	is the flag for a complete dump with mapping structureof last operation of the tree

Reimplemented from bitpit::ParaTree.

Definition at line 137 of file PabloUniform.cpp.

◆ getArea() [1/3]

double bitpit::PabloUniform::getArea ( const Intersection * inter ) const

Get the area of an intersection (for 2D case the same value of getSize).

Parameters

[in] inter Pointer to target intersection.

Returns: Area of intersection.

Definition at line 749 of file PabloUniform.cpp.

◆ getArea() [2/3]

double bitpit::PabloUniform::getArea ( const Octant * oct ) const

Get the area of an octant (for 2D case the same value of getSize).

Parameters

[in] oct Pointer to the target octant

Returns: Area of octant.

Definition at line 518 of file PabloUniform.cpp.

◆ getArea() [3/3]

double bitpit::PabloUniform::getArea ( uint32_t idx ) const

Get the area of an octant (for 2D case the same value of getSize).

Parameters

[in] idx Local index of target octant.

Returns: Area of octant.

Definition at line 305 of file PabloUniform.cpp.

◆ getBoundingBox()

void bitpit::PabloUniform::getBoundingBox	(	darray3 &	P0,
		darray3 &	P1 ) const

Get the coordinates of the extreme points of a bounding box containing the local tree

Parameters

[out]	P0	Array with coordinates of the first point (lowest coordinates);
[out]	P1	Array with coordinates of the last point (highest coordinates).

Definition at line 690 of file PabloUniform.cpp.

◆ getCenter() [1/5]

darray3 bitpit::PabloUniform::getCenter ( const Intersection * inter ) const

Get the coordinates of the center of an intersection.

Parameters

[in] inter Pointer to target intersection.

Returns: Coordinates of the center of intersection.

Definition at line 758 of file PabloUniform.cpp.

◆ getCenter() [2/5]

darray3 bitpit::PabloUniform::getCenter ( const Octant * oct ) const

Get the coordinates of the center of an octant.

Parameters

[in] oct Pointer to the target octant

Returns: center Coordinates of the center of octant.

Definition at line 548 of file PabloUniform.cpp.

◆ getCenter() [3/5]

void bitpit::PabloUniform::getCenter	(	const Octant *	oct,
		darray3 &	center ) const

Get the coordinates of the center of an octant.

Parameters

[in]	oct	Pointer to the target octant
[out]	center	Coordinates of the center of octant.

Definition at line 536 of file PabloUniform.cpp.

◆ getCenter() [4/5]

darray3 bitpit::PabloUniform::getCenter ( uint32_t idx ) const

Get the coordinates of the center of an octant.

Parameters

[in] idx Local index of target octant.

Returns: center Coordinates of the center of octant.

Definition at line 335 of file PabloUniform.cpp.

◆ getCenter() [5/5]

void bitpit::PabloUniform::getCenter	(	uint32_t	idx,
		darray3 &	center ) const

Get the coordinates of the center of an octant.

Parameters

[in]	idx	Local index of target octant.
[out]	center	Coordinates of the center of octant.

Examples: PABLO_example_00001.cpp, PABLO_example_00004.cpp, PABLO_example_00007.cpp, PABLO_example_00008.cpp, PABLO_example_00009.cpp, and PABLO_example_00010.cpp.

Definition at line 323 of file PabloUniform.cpp.

◆ getCoordinates() [1/2]

darray3 bitpit::PabloUniform::getCoordinates ( const Octant * oct ) const

Get the coordinates of an octant, i.e. the coordinates of its node 0.

Parameters

[in] oct Pointer to the target octant

Returns: Coordinates of node 0.

Definition at line 459 of file PabloUniform.cpp.

◆ getCoordinates() [2/2]

darray3 bitpit::PabloUniform::getCoordinates ( uint32_t idx ) const

Get the coordinates of an octant, i.e. the coordinates of its node 0.

Parameters

[in] idx Local index of target octant.

Returns: Coordinates X,Y,Z of node 0.

Definition at line 246 of file PabloUniform.cpp.

◆ getDumpVersion()

int bitpit::PabloUniform::getDumpVersion ( ) const

overridevirtual

Get the version associated to the binary dumps.

Returns: The version associated to the binary dumps.

Reimplemented from bitpit::ParaTree.

Definition at line 124 of file PabloUniform.cpp.

◆ getFaceCenter() [1/4]

darray3 bitpit::PabloUniform::getFaceCenter	(	const Octant *	oct,
		uint8_t	iface ) const

Get the coordinates of the center of a face of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	iface	Index of the target face.

Returns: center Coordinates of the center of the iface-th face af octant.

Definition at line 576 of file PabloUniform.cpp.

◆ getFaceCenter() [2/4]

void bitpit::PabloUniform::getFaceCenter	(	const Octant *	oct,
		uint8_t	iface,
		darray3 &	center ) const

Get the coordinates of the center of a face of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	iface	Index of the target face.
[out]	center	Coordinates of the center of the iface-th face af octant.

Definition at line 563 of file PabloUniform.cpp.

◆ getFaceCenter() [3/4]

darray3 bitpit::PabloUniform::getFaceCenter	(	uint32_t	idx,
		uint8_t	iface ) const

Get the coordinates of the center of a face of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	iface	Index of the target face.

Returns: center Coordinates of the center of the iface-th face of octant.

Definition at line 363 of file PabloUniform.cpp.

◆ getFaceCenter() [4/4]

void bitpit::PabloUniform::getFaceCenter	(	uint32_t	idx,
		uint8_t	iface,
		darray3 &	center ) const

Get the coordinates of the center of a face of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	iface	Index of the target face.
[out]	center	Coordinates of the center of the iface-th face of octant.

Definition at line 350 of file PabloUniform.cpp.

◆ getL()

double bitpit::PabloUniform::getL ( ) const

Get the length of the domain.

Returns: Length of the octree.

Definition at line 206 of file PabloUniform.cpp.

◆ getLocalMaxSize()

double bitpit::PabloUniform::getLocalMaxSize ( ) const

Get the local current maximum size of the octree.

Returns: Local current maximum size of the local partition of the octree.

Definition at line 672 of file PabloUniform.cpp.

◆ getLocalMinSize()

double bitpit::PabloUniform::getLocalMinSize ( ) const

Get the local current minimum size of the octree.

Returns: Local current minimum size of the local partition of the octree.

Definition at line 680 of file PabloUniform.cpp.

◆ getNode() [1/4]

darray3 bitpit::PabloUniform::getNode	(	const Octant *	oct,
		uint8_t	inode ) const

Get the coordinates of single node of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	inode	Index of the target node.

Returns: Coordinates of the center of the inode-th of octant.

Definition at line 591 of file PabloUniform.cpp.

◆ getNode() [2/4]

void bitpit::PabloUniform::getNode	(	const Octant *	oct,
		uint8_t	inode,
		darray3 &	node ) const

Get the coordinates of the center of a face of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	inode	Index of the target node.
[out]	node	Coordinates of the center of the inode-th of octant.

Definition at line 606 of file PabloUniform.cpp.

◆ getNode() [3/4]

darray3 bitpit::PabloUniform::getNode	(	uint32_t	idx,
		uint8_t	inode ) const

Get the coordinates of a node of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	inode	Index of the target node.

Returns: Coordinates of of the inode-th node of octant.

Definition at line 378 of file PabloUniform.cpp.

◆ getNode() [4/4]

void bitpit::PabloUniform::getNode	(	uint32_t	idx,
		uint8_t	inode,
		darray3 &	node ) const

Get the coordinates of a node of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	inode	Index of the target node.
[out]	node	Coordinates of of the inode-th node of octant.

Definition at line 393 of file PabloUniform.cpp.

◆ getNodeCoordinates()

darray3 bitpit::PabloUniform::getNodeCoordinates ( uint32_t inode ) const

Get the physical coordinates of a node

Parameters

[in] inode Local index of node

Returns: Vector with the coordinates of the node.

Definition at line 864 of file PabloUniform.cpp.

◆ getNodes() [1/5]

darr3vector bitpit::PabloUniform::getNodes ( const Intersection * inter ) const

Get the coordinates of the nodes of an intersection.

Parameters

[in] inter Pointer to target intersection.

Returns: Coordinates of the nodes of intersection.

Definition at line 771 of file PabloUniform.cpp.

◆ getNodes() [2/5]

darr3vector bitpit::PabloUniform::getNodes ( const Octant * oct ) const

Get the coordinates of the nodes of an octant.

Parameters

[in] oct Pointer to the target octant

Returns: nodes Coordinates of the nodes of octant.

Definition at line 633 of file PabloUniform.cpp.

◆ getNodes() [3/5]

void bitpit::PabloUniform::getNodes	(	const Octant *	oct,
		darr3vector &	nodes ) const

Get the coordinates of the nodes of an octant.

Parameters

[in]	oct	Pointer to the target octant
[out]	nodes	Coordinates of the nodes of octant.

Definition at line 618 of file PabloUniform.cpp.

◆ getNodes() [4/5]

darr3vector bitpit::PabloUniform::getNodes ( uint32_t idx ) const

Get the coordinates of the nodes of an octant.

Parameters

[in] idx Local index of target octant.

Returns: nodes Coordinates of the nodes of octant.

Definition at line 420 of file PabloUniform.cpp.

◆ getNodes() [5/5]

void bitpit::PabloUniform::getNodes	(	uint32_t	idx,
		darr3vector &	nodes ) const

Get the coordinates of the nodes of an octant.

Parameters

[in]	idx	Local index of target octant.
[out]	nodes	Coordinates of the nodes of octant.

Examples: PABLO_example_00002.cpp, PABLO_example_00003.cpp, PABLO_example_00004.cpp, PABLO_example_00005.cpp, PABLO_example_00007.cpp, PABLO_example_00008.cpp, PABLO_example_00009.cpp, and PABLO_example_00010.cpp.

Definition at line 405 of file PabloUniform.cpp.

◆ getNormal() [1/5]

darray3 bitpit::PabloUniform::getNormal ( const Intersection * inter ) const

Get the normal of an intersection.

Parameters

[in] inter Pointer to target intersection.

Returns: Coordinates of the normal of intersection.

Definition at line 787 of file PabloUniform.cpp.

◆ getNormal() [2/5]

darray3 bitpit::PabloUniform::getNormal	(	const Octant *	oct,
		uint8_t	iface ) const

Get the normal of a face of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	iface	Index of the face for normal computing.

Returns: normal Coordinates of the normal of face.

Definition at line 661 of file PabloUniform.cpp.

◆ getNormal() [3/5]

void bitpit::PabloUniform::getNormal	(	const Octant *	oct,
		uint8_t	iface,
		darray3 &	normal ) const

Get the normal of a face of an octant.

Parameters

[in]	oct	Pointer to the target octant
[in]	iface	Index of the face for normal computing.
[out]	normal	Coordinates of the normal of face.

Definition at line 651 of file PabloUniform.cpp.

◆ getNormal() [4/5]

darray3 bitpit::PabloUniform::getNormal	(	uint32_t	idx,
		uint8_t	iface ) const

Get the normal of a face of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	iface	Index of the face for normal computing.

Returns: normal Coordinates of the normal of face.

Definition at line 447 of file PabloUniform.cpp.

◆ getNormal() [5/5]

void bitpit::PabloUniform::getNormal	(	uint32_t	idx,
		uint8_t	iface,
		darray3 &	normal ) const

Get the normal of a face of an octant.

Parameters

[in]	idx	Local index of target octant.
[in]	iface	Index of the face for normal computing.
[out]	normal	Coordinates of the normal of face.

Definition at line 437 of file PabloUniform.cpp.

◆ getOrigin()

darray3 bitpit::PabloUniform::getOrigin ( ) const

Get the coordinates of the origin of the octree.

Returns: Coordinates of the origin.

Definition at line 174 of file PabloUniform.cpp.

◆ getPointOwner() [1/2]

Octant * bitpit::PabloUniform::getPointOwner ( darray3 point )

Get the octant owner of an input point.

Parameters

[in] point Coordinates of target point.

Returns: Pointer to octant owner of target point (=NULL if point is outside of the domain).

Definition at line 799 of file PabloUniform.cpp.

◆ getPointOwner() [2/2]

Octant * bitpit::PabloUniform::getPointOwner	(	darray3	point,
		bool &	isghost )

Get the octant owner of an input point.

Parameters

[in]	point	Coordinates of target point.
[out]	isghost	Boolean flag, true if the octant found is ghost

Returns: Index of octant owner of target point (max uint32_t representable if point outside of the ghosted domain).

Definition at line 811 of file PabloUniform.cpp.

◆ getPointOwnerIdx() [1/2]

uint32_t bitpit::PabloUniform::getPointOwnerIdx ( darray3 point ) const

Get the octant owner of an input point.

Parameters

[in] point Coordinates of target point.

Returns: Index of octant owner of target point (max uint32_t representable if point outside of the domain).

Definition at line 825 of file PabloUniform.cpp.

◆ getPointOwnerIdx() [2/2]

uint32_t bitpit::PabloUniform::getPointOwnerIdx	(	darray3	point,
		bool &	isghost ) const

Get the octant owner of an input point.

Parameters

[in]	point	Coordinates of target point.
[out]	isghost	Boolean flag, true if the octant found is ghost

Returns: Index of octant owner of target point (max uint32_t representable if point outside of the ghosted domain).

Definition at line 838 of file PabloUniform.cpp.

◆ getPointOwnerRank()

int bitpit::PabloUniform::getPointOwnerRank ( darray3 point )

Get the octant owner rank of an input point.

Parameters

[in] point Coordinates of target point.

Returns: Owner rank of target point (negative if out of global domain).

Definition at line 849 of file PabloUniform.cpp.

◆ getSize() [1/3]

double bitpit::PabloUniform::getSize ( const Intersection * inter ) const

Get the size of an intersection.

Parameters

[in] inter Pointer to target intersection.

Returns: Size of intersection.

Definition at line 740 of file PabloUniform.cpp.

◆ getSize() [2/3]

double bitpit::PabloUniform::getSize ( const Octant * oct ) const

Get the size of an octant, i.e. the side length.

Parameters

[in] oct Pointer to the target octant

Returns: Size of octant.

Definition at line 509 of file PabloUniform.cpp.

◆ getSize() [3/3]

double bitpit::PabloUniform::getSize ( uint32_t idx ) const

Get the size of an octant, i.e. the side length.

Parameters

[in] idx Local index of target octant.

Returns: Size of octant.

Definition at line 296 of file PabloUniform.cpp.

◆ getVolume() [1/2]

double bitpit::PabloUniform::getVolume ( const Octant * oct ) const

Get the volume of an octant.

Parameters

[in] oct Pointer to the target octant

Returns: Volume of octant.

Definition at line 527 of file PabloUniform.cpp.

◆ getVolume() [2/2]

double bitpit::PabloUniform::getVolume ( uint32_t idx ) const

Get the volume of an octant.

Parameters

[in] idx Local index of target octant.

Returns: Volume of octant.

Definition at line 314 of file PabloUniform.cpp.

◆ getX() [1/2]

double bitpit::PabloUniform::getX ( const Octant * oct ) const

Get the coordinate X of an octant, i.e. the coordinates of its node 0.

Parameters

[in] oct Pointer to the target octant

Returns: Coordinate X of node 0.

Definition at line 473 of file PabloUniform.cpp.

◆ getX() [2/2]

double bitpit::PabloUniform::getX ( uint32_t idx ) const

Get the coordinate X of an octant, i.e. the coordinates of its node 0.

Parameters

[in] idx Local index of target octant.

Returns: Coordinate X of node 0.

Definition at line 260 of file PabloUniform.cpp.

◆ getX0()

double bitpit::PabloUniform::getX0 ( ) const

Get the coordinate X of the origin of the octree.

Returns: Coordinate X of the origin.

Definition at line 182 of file PabloUniform.cpp.

◆ getY() [1/2]

double bitpit::PabloUniform::getY ( const Octant * oct ) const

Get the coordinate Y of an octant, i.e. the coordinates of its node 0.

Parameters

[in] oct Pointer to the target octant

Returns: Coordinate Y of node 0.

Definition at line 485 of file PabloUniform.cpp.

◆ getY() [2/2]

double bitpit::PabloUniform::getY ( uint32_t idx ) const

Get the coordinate Y of an octant, i.e. the coordinates of its node 0.

Parameters

[in] idx Local index of target octant.

Returns: Coordinate Y of node 0.

Definition at line 272 of file PabloUniform.cpp.

◆ getY0()

double bitpit::PabloUniform::getY0 ( ) const

Get the coordinate Y of the origin of the octree.

Returns: Coordinate Y of the origin.

Definition at line 190 of file PabloUniform.cpp.

◆ getZ() [1/2]

double bitpit::PabloUniform::getZ ( const Octant * oct ) const

Get the coordinate Z of an octant, i.e. the coordinates of its node 0.

Parameters

[in] oct Pointer to the target octant

Returns: Coordinate Z of node 0.

Definition at line 497 of file PabloUniform.cpp.

◆ getZ() [2/2]

double bitpit::PabloUniform::getZ ( uint32_t idx ) const

Get the coordinate Z of an octant, i.e. the coordinates of its node 0.

Parameters

[in] idx Local index of target octant.

Returns: Coordinate Z of node 0.

Definition at line 284 of file PabloUniform.cpp.

◆ getZ0()

double bitpit::PabloUniform::getZ0 ( ) const

Get the coordinate Z of the origin of the octree.

Returns: Coordinate Z of the origin.

Definition at line 198 of file PabloUniform.cpp.

◆ levelToSize()

double bitpit::PabloUniform::levelToSize ( uint8_t level ) const

Get the size of an octant corresponding to a target level.

Parameters

[in] level Input level.

Returns: Size of an octant of input level.

Definition at line 233 of file PabloUniform.cpp.

◆ reset()

void bitpit::PabloUniform::reset ( )

overridevirtual

Reset the octree

Reimplemented from bitpit::ParaTree.

Definition at line 106 of file PabloUniform.cpp.

◆ restore()

void bitpit::PabloUniform::restore ( std::istream & stream )

overridevirtual

Restore the octree from the specified stream.

Parameters

stream is the stream to read from

Reimplemented from bitpit::ParaTree.

Definition at line 152 of file PabloUniform.cpp.

◆ setL()

void bitpit::PabloUniform::setL ( double L )

Set the length of the domain.

Parameters

[in] L Length of the octree.

Definition at line 214 of file PabloUniform.cpp.

◆ setOrigin()

void bitpit::PabloUniform::setOrigin ( const darray3 & origin )

Set the origin of the domain.

Parameters

[in] origin Origin of the octree.

Definition at line 224 of file PabloUniform.cpp.

◆ write()

void bitpit::PabloUniform::write ( const std::string & filename )

Write the physical octree mesh in .vtu format in a user-defined file. If the connectivity is not stored, the method temporary computes it. If the connectivity of ghost octants is already computed, the method writes the ghosts on file.

Parameters

[in] filename Name of output file (PABLO will add the total number of processes p000# and the current rank s000#).

Examples: PABLO_example_00001.cpp, PABLO_example_00002.cpp, PABLO_example_00005.cpp, and PABLO_example_00011.cpp.

Definition at line 881 of file PabloUniform.cpp.

◆ writeTest()

void bitpit::PabloUniform::writeTest	(	const std::string &	filename,
		dvector	data )

Write the physical octree mesh in .vtu format with data for test in a user-defined file. If the connectivity is not stored, the method temporary computes it. The method doesn't write the ghosts on file.

Parameters

[in]	filename	Name of output file (PABLO will add the total number of processes p000# and the current rank s000#).
[in]	data	Vector of double with user data.

Examples: PABLO_example_00003.cpp, PABLO_example_00004.cpp, PABLO_example_00007.cpp, PABLO_example_00008.cpp, PABLO_example_00009.cpp, and PABLO_example_00010.cpp.

Definition at line 1035 of file PabloUniform.cpp.

The documentation for this class was generated from the following files:

src/PABLO/PabloUniform.hpp
src/PABLO/PabloUniform.cpp

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ PabloUniform() [1/3]

◆ PabloUniform() [2/3]

◆ PabloUniform() [3/3]

Member Function Documentation

◆ dump()

◆ getArea() [1/3]

◆ getArea() [2/3]

◆ getArea() [3/3]

◆ getBoundingBox()

◆ getCenter() [1/5]

◆ getCenter() [2/5]

◆ getCenter() [3/5]

◆ getCenter() [4/5]

◆ getCenter() [5/5]

◆ getCoordinates() [1/2]

◆ getCoordinates() [2/2]

◆ getDumpVersion()

◆ getFaceCenter() [1/4]

◆ getFaceCenter() [2/4]

◆ getFaceCenter() [3/4]

◆ getFaceCenter() [4/4]

◆ getL()

◆ getLocalMaxSize()

◆ getLocalMinSize()

◆ getNode() [1/4]

◆ getNode() [2/4]

◆ getNode() [3/4]

◆ getNode() [4/4]

◆ getNodeCoordinates()

◆ getNodes() [1/5]

◆ getNodes() [2/5]

◆ getNodes() [3/5]

◆ getNodes() [4/5]

◆ getNodes() [5/5]

◆ getNormal() [1/5]

◆ getNormal() [2/5]

◆ getNormal() [3/5]

◆ getNormal() [4/5]

◆ getNormal() [5/5]

◆ getOrigin()

◆ getPointOwner() [1/2]

◆ getPointOwner() [2/2]

◆ getPointOwnerIdx() [1/2]

◆ getPointOwnerIdx() [2/2]

◆ getPointOwnerRank()

◆ getSize() [1/3]

◆ getSize() [2/3]

◆ getSize() [3/3]

◆ getVolume() [1/2]

◆ getVolume() [2/2]

◆ getX() [1/2]

◆ getX() [2/2]

◆ getX0()

◆ getY() [1/2]

◆ getY() [2/2]

◆ getY0()

◆ getZ() [1/2]

◆ getZ() [2/2]

◆ getZ0()

◆ levelToSize()

◆ reset()

◆ restore()

◆ setL()

◆ setOrigin()

◆ write()

◆ writeTest()