bitpit::VolUnstructured Class Reference

The VolUnstructured class defines a dummy unstructured volume patch. More...

Inheritance diagram for bitpit::VolUnstructured:

Collaboration diagram for bitpit::VolUnstructured:

Public Member Functions
	VolUnstructured (int dimension, MPI_Comm communicator, std::size_t haloSize=1)
	VolUnstructured (int id, int dimension, MPI_Comm communicator, std::size_t haloSize=1)
	VolUnstructured (MPI_Comm communicator, std::size_t haloSize=1)
std::unique_ptr< PatchKernel >	clone () const override
double	evalCellSize (long id) const override
double	evalCellVolume (long id) const override
double	evalInterfaceArea (long id) const override
std::array< double, 3 >	evalInterfaceNormal (long id) const override
bool	isPointInside (const std::array< double, 3 > &point) const override
bool	isPointInside (double x, double y, double z) const
bool	isPointInside (long id, const std::array< double, 3 > &point) const override
bool	isPointInside (long id, double x, double y, double z) const
long	locatePoint (const std::array< double, 3 > &point) const override
long	locatePoint (double x, double y, double z) const
Public Member Functions inherited from bitpit::VolumeKernel
bool	areFaceVerticesOrdered (const Cell &cell, int face) const
void	extractEnvelope (SurfaceKernel &envelope) const
int	getFaceOrderedLocalVertex (const Cell &cell, int face, std::size_t n) const
ConstProxyVector< long >	getFaceOrderedVertexIds (const Cell &cell, int face) const
int	getLineCodimension () const override
int	getPointCodimension () const override
int	getSurfaceCodimension () const override
int	getVolumeCodimension () const override
bool	isPointInside (double x, double y, double z) const
bool	isPointInside (long id, double x, double y, double z) const
Public Member Functions inherited from bitpit::PatchKernel
	PatchKernel (PatchKernel &&other)
virtual	~PatchKernel ()
std::vector< adaption::Info >	adaption (bool trackAdaption=true, bool squeezeStorage=false)
std::vector< adaption::Info >	adaptionAlter (bool trackAdaption=true, bool squeezeStorage=false)
void	adaptionCleanup ()
std::vector< adaption::Info >	adaptionPrepare (bool trackAdaption=true)
CellIterator	addCell (Cell &&source, int owner, int haloLayer, long id=Element::NULL_ID)
CellIterator	addCell (Cell &&source, int owner, long id=Element::NULL_ID)
CellIterator	addCell (Cell &&source, long id=Element::NULL_ID)
CellIterator	addCell (const Cell &source, int owner, int haloLayer, long id=Element::NULL_ID)
CellIterator	addCell (const Cell &source, int owner, long id=Element::NULL_ID)
CellIterator	addCell (const Cell &source, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, const std::vector< long > &connectivity, int owner, int haloLayer, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, const std::vector< long > &connectivity, int owner, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, int owner, int haloLayer, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, int owner, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, long id=Element::NULL_ID)
CellIterator	addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID)
InterfaceIterator	addInterface (const Interface &source, long id=Element::NULL_ID)
InterfaceIterator	addInterface (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID)
InterfaceIterator	addInterface (ElementType type, long id=Element::NULL_ID)
InterfaceIterator	addInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID)
InterfaceIterator	addInterface (Interface &&source, long id=Element::NULL_ID)
VertexIterator	addVertex (const std::array< double, 3 > &coords, long id=Vertex::NULL_ID)
VertexIterator	addVertex (const Vertex &source, long id=Vertex::NULL_ID)
VertexIterator	addVertex (Vertex &&source, long id=Vertex::NULL_ID)
bool	areAdjacenciesDirty (bool global=false) const
bool	areInterfacesDirty (bool global=false) const
bool	arePartitioningInfoDirty (bool global=true) const
void	buildAdjacencies ()
void	buildInterfaces ()
CellIterator	cellBegin ()
CellConstIterator	cellConstBegin () const
CellConstIterator	cellConstEnd () const
CellIterator	cellEnd ()
std::vector< long >	collapseCoincidentVertices ()
void	consecutiveRenumber (long offsetVertices, long offsetCells, long offsetInterfaces)
void	consecutiveRenumberCells (long offset=0)
void	consecutiveRenumberInterfaces (long offset=0)
void	consecutiveRenumberVertices (long offset=0)
long	countBorderCells () const
long	countBorderFaces () const
long	countBorderInterfaces () const
long	countBorderVertices () const
long	countDuplicateCells () const
long	countFaces () const
long	countFreeCells () const
long	countFreeFaces () const
long	countFreeInterfaces () const
long	countFreeVertices () const
long	countOrphanCells () const
long	countOrphanInterfaces () const
long	countOrphanVertices () const
bool	deleteCell (long id)
template<typename IdStorage>
bool	deleteCells (const IdStorage &ids)
bool	deleteCoincidentVertices ()
bool	deleteInterface (long id)
template<typename IdStorage>
bool	deleteInterfaces (const IdStorage &ids)
bool	deleteOrphanInterfaces ()
bool	deleteOrphanVertices ()
void	destroyAdjacencies ()
void	destroyInterfaces ()
void	displayCells (std::ostream &out, unsigned int padding=0) const
void	displayInterfaces (std::ostream &out, unsigned int padding=0) const
void	displayTopologyStats (std::ostream &out, unsigned int padding=0) const
void	displayVertices (std::ostream &out, unsigned int padding=0) const
bool	dump (std::ostream &stream)
bool	dump (std::ostream &stream) const
bool	empty (bool global=true) const
void	enableCellBalancing (long id, bool enabled)
virtual void	evalCellBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
virtual std::array< double, 3 >	evalCellCentroid (long id) const
void	evalElementBoundingBox (const Element &element, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
std::array< double, 3 >	evalElementCentroid (const Element &element) const
virtual void	evalInterfaceBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const
virtual std::array< double, 3 >	evalInterfaceCentroid (long id) const
double	evalPartitioningUnbalance () const
double	evalPartitioningUnbalance (const std::unordered_map< long, double > &cellWeights) const
void	findCellEdgeNeighs (long id, bool complete, std::vector< long > *neighs) const
std::vector< long >	findCellEdgeNeighs (long id, bool complete=true) const
std::vector< long >	findCellEdgeNeighs (long id, int edge) const
void	findCellEdgeNeighs (long id, int edge, std::vector< long > *neighs) const
std::vector< long >	findCellFaceNeighs (long id) const
std::vector< long >	findCellFaceNeighs (long id, int face) const
void	findCellFaceNeighs (long id, int face, std::vector< long > *neighs) const
void	findCellFaceNeighs (long id, std::vector< long > *neighs) const
std::vector< long >	findCellNeighs (long id) const
void	findCellNeighs (long id, int codimension, bool complete, std::vector< long > *neighs) const
std::vector< long >	findCellNeighs (long id, int codimension, bool complete=true) const
void	findCellNeighs (long id, std::vector< long > *neighs) const
void	findCellVertexNeighs (long id, bool complete, std::vector< long > *neighs) const
std::vector< long >	findCellVertexNeighs (long id, bool complete=true) const
std::vector< long >	findCellVertexNeighs (long id, int vertex) const
void	findCellVertexNeighs (long id, int vertex, std::vector< long > *neighs) const
std::vector< long >	findCellVertexOneRing (long id, int vertex) const
void	findCellVertexOneRing (long id, int vertex, std::vector< long > *neighs) const
std::vector< long >	findDuplicateCells () const
bool	findFaceNeighCell (long cellId, long neighId, int *cellFace, int *cellAdjacencyId) const
std::vector< long >	findOrphanCells () const
std::vector< long >	findOrphanInterfaces () const
std::vector< long >	findOrphanVertices ()
std::vector< long >	findVertexOneRing (long vertexId) const
void	findVertexOneRing (long vertexId, std::vector< long > *ring) const
void	flushData (std::fstream &stream, const std::string &name, VTKFormat format) override
AdaptionMode	getAdaptionMode () const
AdaptionStatus	getAdaptionStatus (bool global=false) const
AdjacenciesBuildStrategy	getAdjacenciesBuildStrategy () const
void	getBoundingBox (bool global, std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const
void	getBoundingBox (std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const
Cell &	getCell (long id)
const Cell &	getCell (long id) const
adaption::Marker	getCellAdaptionMarker (long id)
CellConstIterator	getCellConstIterator (long id) const
virtual long	getCellCount () const
int	getCellHaloLayer (long id) const
CellIterator	getCellIterator (long id)
int	getCellOwner (long id) const
int	getCellRank (long id) const
PiercedVector< Cell > &	getCells ()
const PiercedVector< Cell > &	getCells () const
virtual ElementType	getCellType (long id) const
ConstProxyVector< std::array< double BITPIT_COMMA 3 > >	getCellVertexCoordinates (long id) const
void	getCellVertexCoordinates (long id, std::array< double, 3 > *coordinates) const
void	getCellVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
const MPI_Comm &	getCommunicator () const
int	getDimension () const
int	getDumpVersion () const
ConstProxyVector< std::array< double BITPIT_COMMA 3 > >	getElementVertexCoordinates (const Element &element) const
void	getElementVertexCoordinates (const Element &element, std::array< double, 3 > *coordinates) const
void	getElementVertexCoordinates (const Element &element, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
Cell &	getFirstGhost ()
const Cell &	getFirstGhost () const
Cell &	getFirstGhostCell ()
const Cell &	getFirstGhostCell () const
Vertex &	getFirstGhostVertex ()
const Vertex &	getFirstGhostVertex () const
long	getGhostCellCount () const
const std::unordered_map< int, std::vector< long > > &	getGhostCellExchangeSources () const
const std::vector< long > &	getGhostCellExchangeSources (int rank) const
const std::unordered_map< int, std::vector< long > > &	getGhostCellExchangeTargets () const
const std::vector< long > &	getGhostCellExchangeTargets (int rank) const
long	getGhostCount () const
const std::unordered_map< int BITPIT_COMMA std::vector< long > > &	getGhostExchangeSources () const
const std::vector< long > &	getGhostExchangeSources (int rank) const
const std::unordered_map< int BITPIT_COMMA std::vector< long > > &	getGhostExchangeTargets () const
const std::vector< long > &	getGhostExchangeTargets (int rank) const
long	getGhostVertexCount () const
const std::unordered_map< int, std::vector< long > > &	getGhostVertexExchangeSources () const
const std::vector< long > &	getGhostVertexExchangeSources (int rank) const
const std::unordered_map< int, std::vector< long > > &	getGhostVertexExchangeTargets () const
const std::vector< long > &	getGhostVertexExchangeTargets (int rank) const
std::size_t	getHaloSize () const
int	getId () const
Interface &	getInterface (long id)
const Interface &	getInterface (long id) const
InterfaceConstIterator	getInterfaceConstIterator (long id) const
virtual long	getInterfaceCount () const
InterfaceIterator	getInterfaceIterator (long id)
PiercedVector< Interface > &	getInterfaces ()
const PiercedVector< Interface > &	getInterfaces () const
InterfacesBuildStrategy	getInterfacesBuildStrategy () const
virtual ElementType	getInterfaceType (long id) const
ConstProxyVector< std::array< double BITPIT_COMMA 3 > >	getInterfaceVertexCoordinates (long id) const
void	getInterfaceVertexCoordinates (long id, std::array< double, 3 > *coordinates) const
void	getInterfaceVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
long	getInternalCellCount () const
std::set< int >	getInternalCellPIDs ()
std::vector< long >	getInternalCellsByPID (int pid)
long	getInternalCount () const
long	getInternalVertexCount () const
Cell &	getLastInternalCell ()
const Cell &	getLastInternalCell () const
Vertex &	getLastInternalVertex ()
const Vertex &	getLastInternalVertex () const
std::vector< int >	getNeighbourRanks ()
int	getOwner (bool allowDirty=false) const
PartitioningMode	getPartitioningMode () const
PartitioningStatus	getPartitioningStatus (bool global=false) const
int	getProcessorCount () const
int	getRank () const
double	getTol () const
Vertex &	getVertex (long id)
const Vertex &	getVertex (long id) const
VertexConstIterator	getVertexConstIterator (long id) const
const std::array< double, 3 > &	getVertexCoords (long id) const
void	getVertexCoords (std::size_t nVertices, const long *ids, std::array< double, 3 > *coordinates) const
void	getVertexCoords (std::size_t nVertices, const long *ids, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const
virtual long	getVertexCount () const
VertexIterator	getVertexIterator (long id)
int	getVertexOwner (long id) const
int	getVertexRank (long id) const
PiercedVector< Vertex > &	getVertices ()
const PiercedVector< Vertex > &	getVertices () const
VTKUnstructuredGrid &	getVTK ()
const VTKUnstructuredGrid &	getVTK () const
const CellConstRange	getVTKCellWriteRange () const
WriteTarget	getVTKWriteTarget () const
CellIterator	ghostBegin ()
CellIterator	ghostCell2InternalCell (long id)
CellIterator	ghostCellBegin ()
CellConstIterator	ghostCellConstBegin () const
CellConstIterator	ghostCellConstEnd () const
CellIterator	ghostCellEnd ()
CellConstIterator	ghostConstBegin () const
CellConstIterator	ghostConstEnd () const
CellIterator	ghostEnd ()
VertexIterator	ghostVertexBegin ()
VertexConstIterator	ghostVertexConstBegin () const
VertexConstIterator	ghostVertexConstEnd () const
VertexIterator	ghostVertexEnd ()
void	initializeAdjacencies (AdjacenciesBuildStrategy strategy=ADJACENCIES_AUTOMATIC)
void	initializeInterfaces (InterfacesBuildStrategy strategy=INTERFACES_AUTOMATIC)
InterfaceIterator	interfaceBegin ()
InterfaceConstIterator	interfaceConstBegin () const
InterfaceConstIterator	interfaceConstEnd () const
InterfaceIterator	interfaceEnd ()
CellIterator	internalBegin ()
CellIterator	internalCell2GhostCell (long id, int owner, int haloLayer)
CellIterator	internalCellBegin ()
CellConstIterator	internalCellConstBegin () const
CellConstIterator	internalCellConstEnd () const
CellIterator	internalCellEnd ()
CellConstIterator	internalConstBegin () const
CellConstIterator	internalConstEnd () const
CellIterator	internalEnd ()
VertexIterator	internalVertexBegin ()
VertexConstIterator	internalVertexConstBegin () const
VertexConstIterator	internalVertexConstEnd () const
VertexIterator	internalVertexEnd ()
bool	intersectInterfacePlane (long id, std::array< double, 3 > P, std::array< double, 3 > nP, std::array< std::array< double, 3 >, 2 > *intersection, std::vector< std::array< double, 3 > > *polygon) const
bool	isAdaptionSupported () const
bool	isBoundingBoxDirty (bool global=false) const
bool	isCellAutoIndexingEnabled () const
bool	isDirty (bool global=false) const
bool	isDistributed (bool allowDirty=false) const
bool	isExpert () const
bool	isInterfaceAutoIndexingEnabled () const
bool	isInterfaceOrphan (long id) const
bool	isPartitioned () const
bool	isPartitioningSupported () const
bool	isRankNeighbour (int rank)
bool	isThreeDimensional () const
bool	isTolCustomized () const
bool	isVertexAutoIndexingEnabled () const
long	locatePoint (double x, double y, double z) const
void	markCellForCoarsening (long id)
void	markCellForRefinement (long id)
PatchKernel &	operator= (PatchKernel &&other)
std::vector< adaption::Info >	partition (bool trackPartitioning, bool squeezeStorage=false)
std::vector< adaption::Info >	partition (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false)
std::vector< adaption::Info >	partition (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false)
std::vector< adaption::Info >	partition (MPI_Comm communicator, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
std::vector< adaption::Info >	partition (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
std::vector< adaption::Info >	partition (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1)
std::vector< adaption::Info >	partitioningAlter (bool trackPartitioning=true, bool squeezeStorage=false)
void	partitioningCleanup ()
std::vector< adaption::Info >	partitioningPrepare (bool trackPartitioning)
std::vector< adaption::Info >	partitioningPrepare (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning)
std::vector< adaption::Info >	partitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning)
std::vector< adaption::Info >	partitioningPrepare (MPI_Comm communicator, bool trackPartitioning, std::size_t haloSize=1)
std::vector< adaption::Info >	partitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, std::size_t haloSize=1)
std::vector< adaption::Info >	partitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, std::size_t haloSize=1)
template<typename Function>
void	processCellFaceNeighbours (long seedId, int nLayers, Function function) const
template<typename Selector, typename Function>
void	processCellFaceNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const
template<typename Function>
void	processCellNeighbours (long seedId, int nLayers, Function function) const
template<typename Selector, typename Function>
void	processCellNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const
template<typename Function, typename SeedContainer>
void	processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const
template<typename Selector, typename Function, typename SeedContainer>
void	processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const
template<typename Function, typename SeedContainer>
void	processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const
template<typename Selector, typename Function, typename SeedContainer>
void	processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const
bool	reserveCells (size_t nCells)
bool	reserveInterfaces (size_t nInterfaces)
bool	reserveVertices (size_t nVertices)
virtual void	reset ()
void	resetCellAdaptionMarker (long id)
virtual void	resetCells ()
virtual void	resetInterfaces ()
void	resetTol ()
virtual void	resetVertices ()
void	restore (std::istream &stream, bool reregister=false)
virtual void	rotate (const std::array< double, 3 > &n0, const std::array< double, 3 > &n1, double angle)
void	rotate (double n0x, double n0y, double n0z, double n1x, double n1y, double n1z, double angle)
void	scale (const std::array< double, 3 > &scaling)
virtual void	scale (const std::array< double, 3 > &scaling, const std::array< double, 3 > &origin)
void	scale (double scaling)
void	scale (double scaling, const std::array< double, 3 > &origin)
void	scale (double sx, double sy, double sz)
void	scale (double sx, double sy, double sz, const std::array< double, 3 > &origin)
void	setCellAutoIndexing (bool enabled)
virtual void	setDimension (int dimension)
void	setHaloSize (std::size_t haloSize)
void	setId (int id)
void	setInterfaceAutoIndexing (bool enabled)
virtual void	settleAdaptionMarkers ()
void	setTol (double tolerance)
void	setVertexAutoIndexing (bool enabled)
void	setVTKWriteTarget (WriteTarget targetCells)
virtual void	simulateCellUpdate (const long id, adaption::Marker marker, std::vector< Cell > *virtualCells, PiercedVector< Vertex, long > *virtualVertices) const
bool	sort ()
bool	sortCells ()
bool	sortInterfaces ()
bool	sortVertices ()
bool	squeeze ()
bool	squeezeCells ()
bool	squeezeInterfaces ()
bool	squeezeVertices ()
virtual void	translate (const std::array< double, 3 > &translation)
void	translate (double sx, double sy, double sz)
std::vector< adaption::Info >	update (bool trackAdaption=true, bool squeezeStorage=false)
void	updateAdjacencies (bool forcedUpdated=false)
void	updateBoundingBox (bool forcedUpdated=false)
void	updateInterfaces (bool forcedUpdated=false)
VertexIterator	vertexBegin ()
VertexConstIterator	vertexConstBegin () const
VertexConstIterator	vertexConstEnd () const
VertexIterator	vertexEnd ()
void	write (const std::string &name, VTKWriteMode mode, double time)
void	write (const std::string &name, VTKWriteMode mode=VTKWriteMode::DEFAULT)
void	write (VTKWriteMode mode, double time)
void	write (VTKWriteMode mode=VTKWriteMode::DEFAULT)
Public Member Functions inherited from bitpit::VTKBaseStreamer
virtual void	absorbData (std::fstream &, const std::string &, VTKFormat, uint64_t, uint8_t, VTKDataType)
template<typename T>
void	flushValue (std::fstream &, VTKFormat, const T &value) const
template<typename T>
void	flushValue (std::fstream &, VTKFormat, const T *values, int nValues) const

Protected Member Functions
void	_dump (std::ostream &stream) const override
int	_getDumpVersion () const override
std::size_t	_getMaxHaloSize () override
void	_restore (std::istream &stream) override
Protected Member Functions inherited from bitpit::VolumeKernel
	VolumeKernel (int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
	VolumeKernel (int id, int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
	VolumeKernel (MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
Protected Member Functions inherited from bitpit::PatchKernel
	PatchKernel (const PatchKernel &other)
	PatchKernel (int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
	PatchKernel (int id, int dimension, MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
	PatchKernel (MPI_Comm communicator, std::size_t haloSize, AdaptionMode adaptionMode, PartitioningMode partitioningMode)
virtual std::vector< adaption::Info >	_adaptionAlter (bool trackAdaption)
virtual void	_adaptionCleanup ()
virtual std::vector< adaption::Info >	_adaptionPrepare (bool trackAdaption)
virtual bool	_enableCellBalancing (long id, bool enabled)
virtual void	_findCellEdgeNeighs (long id, int edge, const std::vector< long > *blackList, std::vector< long > *neighs) const
virtual void	_findCellFaceNeighs (long id, int face, const std::vector< long > *blackList, std::vector< long > *neighs) const
virtual void	_findCellNeighs (long id, const std::vector< long > *blackList, std::vector< long > *neighs) const
virtual void	_findCellVertexNeighs (long id, int vertex, const std::vector< long > *blackList, std::vector< long > *neighs) const
virtual std::vector< long >	_findGhostCellExchangeSources (int rank)
virtual adaption::Marker	_getCellAdaptionMarker (long id)
virtual long	_getCellNativeIndex (long id) const
virtual bool	_markCellForCoarsening (long id)
virtual bool	_markCellForRefinement (long id)
virtual std::vector< adaption::Info >	_partitioningAlter (bool trackPartitioning)
virtual void	_partitioningCleanup ()
virtual std::vector< adaption::Info >	_partitioningPrepare (const std::unordered_map< long, double > &cellWeights, double defaultWeight, bool trackPartitioning)
virtual std::vector< adaption::Info >	_partitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning)
virtual void	_resetAdjacencies (bool release)
virtual bool	_resetCellAdaptionMarker (long id)
virtual void	_resetInterfaces (bool release)
virtual void	_resetTol ()
virtual void	_setHaloSize (std::size_t haloSize)
virtual void	_setTol (double tolerance)
virtual void	_updateAdjacencies ()
virtual void	_updateInterfaces ()
virtual void	_writeFinalize ()
virtual void	_writePrepare ()
void	addPointToBoundingBox (const std::array< double, 3 > &point)
std::unordered_map< long, std::vector< long > >	binGroupVertices (const PiercedVector< Vertex > &vertices, int nBins)
std::unordered_map< long, std::vector< long > >	binGroupVertices (int nBins)
void	clearBoundingBox ()
template<typename item_t, typename id_t = long>
std::unordered_map< id_t, id_t >	consecutiveItemRenumbering (PiercedVector< item_t, id_t > &container, long offset)
bool	deleteVertex (long id)
template<typename IdStorage>
bool	deleteVertices (const IdStorage &ids)
void	dumpCells (std::ostream &stream) const
void	dumpInterfaces (std::ostream &stream) const
void	dumpVertices (std::ostream &stream) const
void	extractEnvelope (PatchKernel &envelope) const
virtual int	findAdjoinNeighFace (const Cell &cell, int cellFace, const Cell &neigh) const
AlterationFlags	getCellAlterationFlags (long id) const
AlterationFlags	getInterfaceAlterationFlags (long id) const
VertexIterator	ghostVertex2InternalVertex (long id)
VertexIterator	internalVertex2GhostVertex (long id, int owner)
bool	isBoundingBoxFrozen () const
bool	isCommunicatorSet () const
virtual bool	isSameFace (const Cell &cell_A, int face_A, const Cell &cell_B, int face_B) const
template<typename item_t, typename id_t = long>
void	mappedItemRenumbering (PiercedVector< item_t, id_t > &container, const std::unordered_map< id_t, id_t > &renumberMap)
PatchKernel &	operator= (const PatchKernel &other)=delete
void	pruneStaleAdjacencies ()
void	pruneStaleInterfaces ()
void	removePointFromBoundingBox (const std::array< double, 3 > &point)
void	resetAdjacencies ()
void	resetCellAlterationFlags (long id, AlterationFlags flags=FLAG_NONE)
void	resetInterfaceAlterationFlags (long id, AlterationFlags flags=FLAG_NONE)
CellIterator	restoreCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id)
void	restoreCells (std::istream &stream)
InterfaceIterator	restoreInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id)
void	restoreInterfaces (std::istream &stream)
VertexIterator	restoreVertex (const std::array< double, 3 > &coords, int owner, long id)
void	restoreVertices (std::istream &stream)
void	setAdaptionMode (AdaptionMode mode)
void	setAdaptionStatus (AdaptionStatus status)
void	setAdjacenciesBuildStrategy (AdjacenciesBuildStrategy status)
void	setBoundingBox (const std::array< double, 3 > &minPoint, const std::array< double, 3 > &maxPoint)
void	setBoundingBoxDirty (bool dirty)
void	setBoundingBoxFrozen (bool frozen)
void	setCellAlterationFlags (AlterationFlags flags)
void	setCellAlterationFlags (long id, AlterationFlags flags)
virtual void	setCommunicator (MPI_Comm communicator)
void	setExpert (bool expert)
void	setInterfaceAlterationFlags (AlterationFlags flags)
void	setInterfaceAlterationFlags (long id, AlterationFlags flags)
void	setInterfacesBuildStrategy (InterfacesBuildStrategy status)
void	setPartitioned (bool partitioned)
void	setPartitioningMode (PartitioningMode mode)
void	setPartitioningStatus (PartitioningStatus status)
bool	testAlterationFlags (AlterationFlags availableFlags, AlterationFlags requestedFlags) const
bool	testCellAlterationFlags (long id, AlterationFlags flags) const
bool	testInterfaceAlterationFlags (long id, AlterationFlags flags) const
void	unsetCellAlterationFlags (AlterationFlags flags)
void	unsetCellAlterationFlags (long id, AlterationFlags flags)
void	unsetInterfaceAlterationFlags (AlterationFlags flags)
void	unsetInterfaceAlterationFlags (long id, AlterationFlags flags)
void	updateFirstGhostCellId ()
void	updateFirstGhostVertexId ()
void	updateLastInternalCellId ()
void	updateLastInternalVertexId ()

Additional Inherited Members
Public Types inherited from bitpit::PatchKernel
enum	AdaptionMode { ADAPTION_DISABLED = -1 , ADAPTION_AUTOMATIC , ADAPTION_MANUAL }
enum	AdaptionStatus { ADAPTION_CLEAN , ADAPTION_DIRTY , ADAPTION_PREPARED , ADAPTION_ALTERED }
enum	AdjacenciesBuildStrategy { ADJACENCIES_NONE = -1 , ADJACENCIES_AUTOMATIC }
typedef PiercedVector< Cell >::const_iterator	CellConstIterator
typedef PiercedVector< Cell >::const_range	CellConstRange
typedef PiercedVector< Cell >::iterator	CellIterator
typedef PiercedVector< Cell >::range	CellRange
typedef PiercedVector< Interface >::const_iterator	InterfaceConstIterator
typedef PiercedVector< Interface >::const_range	InterfaceConstRange
typedef PiercedVector< Interface >::iterator	InterfaceIterator
typedef PiercedVector< Interface >::range	InterfaceRange
enum	InterfacesBuildStrategy { INTERFACES_NONE = -1 , INTERFACES_AUTOMATIC }
enum	PartitioningMode { PARTITIONING_DISABLED = -1 , PARTITIONING_ENABLED }
enum	PartitioningStatus { PARTITIONING_CLEAN , PARTITIONING_PREPARED , PARTITIONING_ALTERED }
typedef PiercedVector< Vertex >::const_iterator	VertexConstIterator
typedef PiercedVector< Vertex >::const_range	VertexConstRange
typedef PiercedVector< Vertex >::iterator	VertexIterator
typedef PiercedVector< Vertex >::range	VertexRange
enum	WriteTarget { WRITE_TARGET_CELLS_ALL , WRITE_TARGET_CELLS_INTERNAL }
Static Public Member Functions inherited from bitpit::PatchKernel
template<typename patch_t>
static std::unique_ptr< patch_t >	clone (const patch_t *original)
Protected Types inherited from bitpit::PatchKernel
typedef uint16_t	AlterationFlags
typedef std::unordered_map< long, AlterationFlags >	AlterationFlagsStorage
Protected Attributes inherited from bitpit::PatchKernel
AlterationFlagsStorage	m_alteredCells
AlterationFlagsStorage	m_alteredInterfaces
PiercedVector< Cell >	m_cells
PiercedVector< Interface >	m_interfaces
PiercedVector< Vertex >	m_vertices
Static Protected Attributes inherited from bitpit::PatchKernel
static const double	DEFAULT_PARTITIONING_WEIGTH = 1.
static const AlterationFlags	FLAG_ADJACENCIES_DIRTY = (1u << 1)
static const AlterationFlags	FLAG_DANGLING = (1u << 3)
static const AlterationFlags	FLAG_DELETED = (1u << 0)
static const AlterationFlags	FLAG_INTERFACES_DIRTY = (1u << 2)
static const AlterationFlags	FLAG_NONE = 0x0

Detailed Description

The VolUnstructured class defines a dummy unstructured volume patch.

VolUnstructured defines a dummy unstructured volume patch. This is just a dummy interface, the real implementation will come in a future release.

Definition at line 35 of file volunstructured.hpp.

Constructor & Destructor Documentation

VolUnstructured() [1/3]

bitpit::VolUnstructured::VolUnstructured	(	MPI_Comm	communicator,
		std::size_t	haloSize = 1 )

Creates an uninitialized partitioned patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters

communicator	is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created
haloSize	is the size, expressed in number of layers, of the ghost cells halo

Definition at line 56 of file volunstructured.cpp.

VolUnstructured() [2/3]

bitpit::VolUnstructured::VolUnstructured	(	int	dimension,
		MPI_Comm	communicator,
		std::size_t	haloSize = 1 )

Creates a patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters

dimension	is the dimension of the patch
communicator	is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created
haloSize	is the size, expressed in number of layers, of the ghost cells halo

Definition at line 83 of file volunstructured.cpp.

VolUnstructured() [3/3]

bitpit::VolUnstructured::VolUnstructured	(	int	id,
		int	dimension,
		MPI_Comm	communicator,
		std::size_t	haloSize = 1 )

Creates a patch.

If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.

Parameters

id	is the id of the patch
dimension	is the dimension of the patch
communicator	is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created
haloSize	is the size, expressed in number of layers, of the ghost cells halo

Definition at line 113 of file volunstructured.cpp.

Member Function Documentation

_dump()

void bitpit::VolUnstructured::_dump ( std::ostream & stream ) const

overrideprotectedvirtual

Write the patch to the specified stream.

Parameters

stream

is the stream to write to

Implements bitpit::PatchKernel.

Definition at line 250 of file volunstructured.cpp.

_getDumpVersion()

int bitpit::VolUnstructured::_getDumpVersion ( ) const

overrideprotectedvirtual

Get the version associated to the binary dumps.

Returns

The version associated to the binary dumps.

Implements bitpit::PatchKernel.

Definition at line 238 of file volunstructured.cpp.

_getMaxHaloSize()

std::size_t bitpit::VolUnstructured::_getMaxHaloSize ( )

overrideprotectedvirtual

Gets the maximum allowed size, expressed in number of layers, of the ghost cells halo.

Returns

The maximum allowed size, expressed in number of layers, of the ghost cells halo.

Reimplemented from bitpit::PatchKernel.

Definition at line 339 of file volunstructured.cpp.

_restore()

void bitpit::VolUnstructured::_restore ( std::istream & stream )

overrideprotectedvirtual

Restore the patch from the specified stream.

Parameters

stream

is the stream to read from

Implements bitpit::PatchKernel.

Definition at line 267 of file volunstructured.cpp.

clone()

std::unique_ptr< PatchKernel > bitpit::VolUnstructured::clone ( ) const

overridevirtual

Creates a clone of the pach.

Returns

A clone of the pach.

Implements bitpit::PatchKernel.

Definition at line 133 of file volunstructured.cpp.

evalCellSize()

double bitpit::VolUnstructured::evalCellSize ( long id ) const

overridevirtual

Evaluates the characteristic size of the specified cell.

Parameters

id	is the id of the cell

Returns

The characteristic size of the specified cell.

Implements bitpit::PatchKernel.

Definition at line 166 of file volunstructured.cpp.

evalCellVolume()

double bitpit::VolUnstructured::evalCellVolume ( long id ) const

overridevirtual

Evaluates the volume of the specified cell.

Parameters

id	is the id of the cell

Returns

The volume of the specified cell.

Implements bitpit::VolumeKernel.

Definition at line 144 of file volunstructured.cpp.

evalInterfaceArea()

double bitpit::VolUnstructured::evalInterfaceArea ( long id ) const

overridevirtual

Evaluates the area of the specified interface.

Parameters

id	is the id of the interface

Returns

The area of the specified interface.

Implements bitpit::VolumeKernel.

Definition at line 184 of file volunstructured.cpp.

evalInterfaceNormal()

std::array< double, 3 > bitpit::VolUnstructured::evalInterfaceNormal ( long id ) const

overridevirtual

Evaluates the normal of the specified interface.

Parameters

id	is the id of the interface

Returns

The normal of the specified interface.

Implements bitpit::VolumeKernel.

Definition at line 206 of file volunstructured.cpp.

isPointInside() [1/4]

bool bitpit::VolUnstructured::isPointInside ( const std::array< double, 3 > & point ) const

overridevirtual

Checks if the specified point is inside the patch.

Parameters

[in]

point

is the point to be checked

Returns

Returns true if the point is inside the patch, false otherwise.

Implements bitpit::VolumeKernel.

Definition at line 285 of file volunstructured.cpp.

isPointInside() [2/4]

bool bitpit::VolumeKernel::isPointInside	(	double	x,
		double	y,
		double	z ) const

Checks if the specified point is inside the patch.

Parameters

[in]	x	is the x coordinate of the point
[in]	y	is the y coordinate of the point
[in]	z	is the z coordinate of the point

Returns

Returns true if the point is inside the patch, false otherwise.

Definition at line 43 of file volume_kernel.cpp.

isPointInside() [3/4]

bool bitpit::VolUnstructured::isPointInside ( long id, const std::array< double, 3 > & point ) const

overridevirtual

Checks if the specified point is inside a cell.

Parameters

[in]	id	is the idof the cell
[in]	point	is the point to be checked

Returns

Returns true if the point is inside the cell, false otherwise.

Implements bitpit::VolumeKernel.

Definition at line 301 of file volunstructured.cpp.

isPointInside() [4/4]

bool bitpit::VolumeKernel::isPointInside	(	long	id,
		double	x,
		double	y,
		double	z ) const

Checks if the specified point is inside a cell.

Parameters

[in]	id	is the index of the cells
[in]	x	is the x coordinate of the point
[in]	y	is the y coordinate of the point
[in]	z	is the z coordinate of the point

Returns

Returns true if the point is inside the cell, false otherwise.

Definition at line 45 of file volume_kernel.cpp.

locatePoint() [1/2]

long bitpit::VolUnstructured::locatePoint ( const std::array< double, 3 > & point ) const

overridevirtual

Locates the cell the contains the point.

If the point is not inside the patch, the function returns the id of the null element.

Parameters

[in]

point

is the point to be checked

Returns

Returns the linear id of the cell the contains the point. If the point is not inside the patch, the function returns the id of the null element.

Implements bitpit::PatchKernel.

Definition at line 322 of file volunstructured.cpp.

locatePoint() [2/2]

long bitpit::PatchKernel::locatePoint	(	double	x,
		double	y,
		double	z ) const

Locates the cell the contains the point.

If the point is not inside the patch, the function returns the id of the null element.

Parameters

[in]	x	is the x coordinate of the point
[in]	y	is the y coordinate of the point
[in]	z	is the z coordinate of the point

Returns

Returns the id of the cell the contains the point. If the point is not inside the patch, the function returns the id of the null element.

Definition at line 646 of file patch_kernel.cpp.

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The documentation for this class was generated from the following files:

• src/volunstructured/volunstructured.hpp
• src/volunstructured/volunstructured.cpp