Sparse matrix. More...

Collaboration diagram for bitpit::SparseMatrix:

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Public Member Functions
	SparseMatrix ()

	SparseMatrix (const SparseMatrix &other)

	SparseMatrix (int blockSize, long nRows, long nCols, long nNZ)

	SparseMatrix (long nRows, long nCols, long nNZ)

	SparseMatrix (MPI_Comm communicator)

	SparseMatrix (MPI_Comm communicator, bool partitioned, int blockSize, long nRows, long nCols, long nNZ)

	SparseMatrix (MPI_Comm communicator, bool partitioned, long nRows, long nCols, long nNZ)

	SparseMatrix (SparseMatrix &&other)=default

	~SparseMatrix ()

void	addRow (const std::vector< long > &rowPattern, const std::vector< double > &rowValues)

void	addRow (long nRowNZ, const long rowPattern, const double rowValues)

void	assembly ()

void	clear (bool release=false)

std::unique_ptr< SparseMatrix >	computeTranspose () const

long	countAddedRows () const

long	countMissingRows () const

virtual void	display (std::ostream &stream, double negligiblity, int indent=0) const

std::vector< long >	extractGhostGlobalCols () const

std::vector< long >	extractGhostGlobalRows () const

std::vector< long >	extractLocalGlobalCols () const

std::vector< long >	extractLocalGlobalRows () const

int	getBlockSize () const

long	getColCount () const

long	getColElementCount () const

long	getColGlobalCount () const

long	getColGlobalElementCount () const

long	getColGlobalElementOffset () const

long	getColGlobalOffset () const

const MPI_Comm &	getCommunicator () const

long	getMaxRowNZCount () const

long	getMaxRowNZElementCount () const

long	getMaxRowNZGlobalCount () const

long	getMaxRowNZGlobalElementCount () const

long	getNZCount () const

long	getNZElementCount () const

long	getNZGlobalCount () const

long	getNZGlobalElementCount () const

long	getRowCount () const

long	getRowElementCount () const

long	getRowGlobalCount () const

long	getRowGlobalElementCount () const

long	getRowGlobalElementOffset () const

long	getRowGlobalOffset () const

long	getRowNZCount (long row) const

long	getRowNZElementCount (long row) const

ConstProxyVector< long >	getRowPattern (long row) const

void	getRowPattern (long row, ConstProxyVector< long > *pattern) const

ConstProxyVector< double >	getRowValues (long row) const

void	getRowValues (long row, ConstProxyVector< double > *values) const

void	initialize (bool partitioned, int blockSize, long nRows, long nCols, long nNZ)

void	initialize (bool partitioned, long nRows, long nCols, long nNZ)

void	initialize (int blockSize, long nRows, long nCols, long nNZ)

void	initialize (long nRows, long nCols, long nNZ)

bool	isAssembled () const

bool	isPartitioned () const

void	squeeze ()

Protected Member Functions
void	clearPatternStorage (bool release)

void	clearValueStorage (bool release)

long *	getRowPatternData (long row)

const long *	getRowPatternData (long row) const

double *	getRowValuesData (long row)

const double *	getRowValuesData (long row) const

void	initializePatternStorage ()

void	initializeValueStorage ()

void	squeezePatternStorage ()

void	squeezeValueStorage ()

Protected Attributes
bool	m_assembled

int	m_blockSize

MPI_Comm	m_communicator

long	m_global_colOffset

long	m_global_maxRowNZ

long	m_global_nCols

long	m_global_nNZ

long	m_global_nRows

long	m_global_rowOffset

long	m_lastRow

long	m_maxRowNZ

long	m_nCols

long	m_nNZ

long	m_nRows

bool	m_partitioned

FlatVector2D< long >	m_pattern

std::vector< double >	m_values

Detailed Description

Sparse matrix.

Rather than working with individual elements in the matrix, it is possible to employ blocks of elements. The size of the blocks can be defined during assembly. When a size different that one is provided, the matrix will store elements by fixed-sized dense nb × nb blocks, where nb is the size of the blocks. Blocking may be advantageous when solving PDE-based simulations that leads to matrices with a naturally blocked structure (with a block size equal to the number of degrees of freedom per cell).

When blocking is used, row and column indexes will count the number of blocks in the row/column direction, not the number of rows/columns of the matrix.

Examples: LA_example_00001.cpp, and RBF_example_00001.cpp.

Definition at line 38 of file system_matrix.hpp.

Constructor & Destructor Documentation

◆ SparseMatrix() [1/7]

bitpit::SparseMatrix::SparseMatrix ( )

The SparseMatrix class mimics the beahviour of the sparse parallel matrix in AIJ/BAIJ format of the PETSc library.

The parallel matrix is partitioned across processes such that the first m0 rows belong to process 0, the next m1 rows belong to process 1, the next m2 rows belong to process 2 etc.. where m0, m1, m2,.. are the local number of rows defined by each processes.

Each process stores values corresponding to [m x N] submatrix, wher N is the global number of columns of the matrix, N is obtained summing the local number of columns of each process.

Although each process stores values for the whole global row, columns are logically partitioned across processes, with the n0 columns belonging to 0th partition, the next n1 columns belonging to the next partition etc.. where n0, n1, n2... are the local number of columns defined by each process.

The DIAGONAL portion of the local submatrix on any given process is the submatrix corresponding to the rows and columns m,n corresponding to the given process. i.e diagonal matrix on process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] etc. The remaining portion of the local submatrix [m x (N-n)] constitute the OFF-DIAGONAL portion.

For a square global matrix we define each process's diagonal portion to be its local rows and the corresponding columns (a square submatrix); each process's off-diagonal portion encompasses the remainder of the local matrix (a rectangular submatrix). Default constructor

Definition at line 84 of file system_matrix.cpp.

◆ SparseMatrix() [2/7]

bitpit::SparseMatrix::SparseMatrix	(	long	nRows,
		long	nCols,
		long	nNZ )

Constructor

Parameters

nRows	is the number of rows of the matrix
nCols	is the number of columns of the matrix
nNZ	is the number of non-zero elements that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 127 of file system_matrix.cpp.

◆ SparseMatrix() [3/7]

bitpit::SparseMatrix::SparseMatrix	(	int	blockSize,
		long	nRows,
		long	nCols,
		long	nNZ )

Constructor

Parameters

blockSize	is the block size of the matrix
nRows	is the number of rows of the matrix
nCols	is the number of columns of the matrix
nNZ	is the number of non-zero blocks that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 144 of file system_matrix.cpp.

◆ SparseMatrix() [4/7]

bitpit::SparseMatrix::SparseMatrix ( MPI_Comm communicator )

Constructor

Parameters

communicator is the MPI communicator

Definition at line 94 of file system_matrix.cpp.

◆ SparseMatrix() [5/7]

bitpit::SparseMatrix::SparseMatrix	(	MPI_Comm	communicator,
		bool	partitioned,
		long	nRows,
		long	nCols,
		long	nNZ )

Constructor

Parameters

communicator	is the MPI communicator
partitioned	controls if the matrix is partitioned
nRows	is the number rows of the matrix, if the matrix is partitioned this is the number of local rows
nCols	is the number columns of the matrix, if the matrix is partitioned this is the number of local columns
nNZ	is the number of non-zero elements that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 164 of file system_matrix.cpp.

◆ SparseMatrix() [6/7]

bitpit::SparseMatrix::SparseMatrix	(	MPI_Comm	communicator,
		bool	partitioned,
		int	blockSize,
		long	nRows,
		long	nCols,
		long	nNZ )

Constructor

Parameters

communicator	is the MPI communicator
partitioned	controls if the matrix is partitioned
blockSize	is the block size of the matrix
nRows	is the number rows of the matrix, if the matrix is partitioned this is the number of local rows
nCols	is the number columns of the matrix, if the matrix is partitioned this is the number of local columns
nNZ	is the number of non-zero blocks that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 186 of file system_matrix.cpp.

◆ SparseMatrix() [7/7]

bitpit::SparseMatrix::SparseMatrix ( const SparseMatrix & other )

Copy constructor

Definition at line 231 of file system_matrix.cpp.

◆ ~SparseMatrix()

bitpit::SparseMatrix::~SparseMatrix ( )

Destructor

Definition at line 257 of file system_matrix.cpp.

Member Function Documentation

◆ addRow() [1/2]

void bitpit::SparseMatrix::addRow	(	const std::vector< long > &	rowPattern,
		const std::vector< double > &	rowValues )

Add a row.

The values of the row are stored using a block-row-major order: the rows of the single block elements are stored consecutively:

  <row_1_block_1><row_1_block_2>...<row_2_block_1><row_2_block_2>...

Parameters

rowPattern	are the indexes of the non-zero columns of the matrix
rowValues	are the values of the non-zero columns of the matrix

Definition at line 1214 of file system_matrix.cpp.

◆ addRow() [2/2]

void bitpit::SparseMatrix::addRow	(	long	nRowNZ,
		const long *	rowPattern,
		const double *	rowValues )

Add a row.

The values of the row are stored using a block-row-major order: the rows of the single block elements are stored consecutively:

  <row_1_block_1><row_1_block_2>...<row_2_block_1><row_2_block_2>...

Parameters

nRowNZ	is the number of non-zero elements in the row
rowPattern	are the indexes of the non-zero columns of the matrix
rowValues	are the values of the non-zero columns of the matrix

Definition at line 1231 of file system_matrix.cpp.

◆ assembly()

void bitpit::SparseMatrix::assembly ( )

Assembly the matrix.

This function should be called after adding all the rows of the matrix. Its purpose is to prepare the matrix for the usage.

It's a collective operation, hence it has to be called by all processes.

Definition at line 737 of file system_matrix.cpp.

◆ clear()

void bitpit::SparseMatrix::clear ( bool release = false )

Clear the matrix.

Parameters

release if set to true the memory hold by the matrix will be released

Definition at line 429 of file system_matrix.cpp.

◆ clearPatternStorage()

void bitpit::SparseMatrix::clearPatternStorage ( bool release )

protected

Clear the storage for the pattern.

Parameters

release if set to true the memory hold by the pattern storage will be released

Definition at line 675 of file system_matrix.cpp.

◆ clearValueStorage()

void bitpit::SparseMatrix::clearValueStorage ( bool release )

protected

Clear the storage for the values.

Parameters

release if set to true the memory hold by the value storage will be released

Definition at line 717 of file system_matrix.cpp.

◆ computeTranspose()

std::unique_ptr< SparseMatrix > bitpit::SparseMatrix::computeTranspose ( ) const

Compute the transpose of the matrix.

The transpose is evaluated as a new matrix, the current matrix is not modified.

Returns: The transpose of the matrix.

Definition at line 1387 of file system_matrix.cpp.

◆ countAddedRows()

long bitpit::SparseMatrix::countAddedRows ( ) const

Count the number of rows that have been added to the matrix.

Returns: The number of rows that have been added to the matrix.

Definition at line 792 of file system_matrix.cpp.

◆ countMissingRows()

long bitpit::SparseMatrix::countMissingRows ( ) const

Count the number of rows that needs to be added to fill the matrix.

Returns: The number of rows that needs to be added to fill the matrix.

Definition at line 779 of file system_matrix.cpp.

◆ display()

void bitpit::SparseMatrix::display	(	std::ostream &	stream,
		double	negligiblity,
		int	indent = 0 ) const

virtual

Displays matrix information.

Parameters

	stream	is the output stream
	negligiblity	is the threshold below which the values are considered negligible
[in]	indent	is the number of spaces to prepend to each row

Definition at line 474 of file system_matrix.cpp.

◆ extractGhostGlobalCols()

std::vector< long > bitpit::SparseMatrix::extractGhostGlobalCols ( ) const

Extract the list of ghost global columns.

Returns: The the list of ghost global columns.

Definition at line 1181 of file system_matrix.cpp.

◆ extractGhostGlobalRows()

std::vector< long > bitpit::SparseMatrix::extractGhostGlobalRows ( ) const

Extract the list of ghost global rows.

Returns: The the list of ghost global rows.

Definition at line 1147 of file system_matrix.cpp.

◆ extractLocalGlobalCols()

std::vector< long > bitpit::SparseMatrix::extractLocalGlobalCols ( ) const

Extract the list of local global columns.

Returns: The the list of local global columns.

Definition at line 1157 of file system_matrix.cpp.

◆ extractLocalGlobalRows()

std::vector< long > bitpit::SparseMatrix::extractLocalGlobalRows ( ) const

Extract the list of local global rows.

Returns: The the list of local global rows.

Definition at line 1126 of file system_matrix.cpp.

◆ getBlockSize()

int bitpit::SparseMatrix::getBlockSize ( ) const

Get the number of blocks of the matrix.

Returns: The number of blocks of the matrix.

Definition at line 802 of file system_matrix.cpp.

◆ getColCount()

long bitpit::SparseMatrix::getColCount ( ) const

Get the number of columns of the matrix.

Returns: The number of columns of the matrix.

Definition at line 822 of file system_matrix.cpp.

◆ getColElementCount()

long bitpit::SparseMatrix::getColElementCount ( ) const

Get the number of columns of the matrix.

Returns: The number of columns of the matrix.

Definition at line 844 of file system_matrix.cpp.

◆ getColGlobalCount()

long bitpit::SparseMatrix::getColGlobalCount ( ) const

Get number of global columns.

Returns: The number of global columns.

Definition at line 1038 of file system_matrix.cpp.

◆ getColGlobalElementCount()

long bitpit::SparseMatrix::getColGlobalElementCount ( ) const

Get the number of global column

Returns: The number of global column

Definition at line 1058 of file system_matrix.cpp.

◆ getColGlobalElementOffset()

long bitpit::SparseMatrix::getColGlobalElementOffset ( ) const

Get global column offset.

Returns: The global column offset.

Definition at line 1070 of file system_matrix.cpp.

◆ getColGlobalOffset()

long bitpit::SparseMatrix::getColGlobalOffset ( ) const

Get global column offset.

Returns: The global column offset.

Definition at line 1048 of file system_matrix.cpp.

◆ getCommunicator()

const MPI_Comm & bitpit::SparseMatrix::getCommunicator ( ) const

Gets the MPI communicator associated to the matrix.

Returns: The MPI communicator associated to the matrix.

Definition at line 955 of file system_matrix.cpp.

◆ getMaxRowNZCount()

long bitpit::SparseMatrix::getMaxRowNZCount ( ) const

Get the maximum number of non-zero blocks/elements per row.

Returns: The maximum number of non-zero blocks/elements per row.

Definition at line 876 of file system_matrix.cpp.

◆ getMaxRowNZElementCount()

long bitpit::SparseMatrix::getMaxRowNZElementCount ( ) const

Get the maximum number of non-zero elements per row.

This is the number of individual non-zero elements, NOT the number of non-zero blocks.

Returns: The maximum number of non-zero elements per row.

Definition at line 932 of file system_matrix.cpp.

◆ getMaxRowNZGlobalCount()

long bitpit::SparseMatrix::getMaxRowNZGlobalCount ( ) const

Get the global maximum number of non-zero elements per row.

Returns: The global maximum number of non-zero elements per row.

Definition at line 1092 of file system_matrix.cpp.

◆ getMaxRowNZGlobalElementCount()

long bitpit::SparseMatrix::getMaxRowNZGlobalElementCount ( ) const

Get the global maximum number of non-zero elements per row.

Returns: The global maximum number of non-zero elements per row.

Definition at line 1114 of file system_matrix.cpp.

◆ getNZCount()

long bitpit::SparseMatrix::getNZCount ( ) const

Get the number of non-zero blocks/elements.

Returns: The number of non-zero blocks/elements.

Definition at line 856 of file system_matrix.cpp.

◆ getNZElementCount()

long bitpit::SparseMatrix::getNZElementCount ( ) const

Get the number of non-zero elements.

This is the number of individual non-zero elements, NOT the number of non-zero blocks.

Returns: The number of non-zero elements.

Definition at line 888 of file system_matrix.cpp.

◆ getNZGlobalCount()

long bitpit::SparseMatrix::getNZGlobalCount ( ) const

Get the global number of non-zero elements.

Returns: The global number of non-zero elements.

Definition at line 1082 of file system_matrix.cpp.

◆ getNZGlobalElementCount()

long bitpit::SparseMatrix::getNZGlobalElementCount ( ) const

Get the global number of non-zero elements.

Returns: The global number of non-zero elements.

Definition at line 1102 of file system_matrix.cpp.

◆ getRowCount()

long bitpit::SparseMatrix::getRowCount ( ) const

Get the number of rows of the matrix.

Returns: The number of rows of the matrix.

Definition at line 812 of file system_matrix.cpp.

◆ getRowElementCount()

long bitpit::SparseMatrix::getRowElementCount ( ) const

Get the number of rows of the matrix.

Returns: The number of rows of the matrix.

Definition at line 832 of file system_matrix.cpp.

◆ getRowGlobalCount()

long bitpit::SparseMatrix::getRowGlobalCount ( ) const

Get the number of global rows

Returns: The number of global rows

Definition at line 994 of file system_matrix.cpp.

◆ getRowGlobalElementCount()

long bitpit::SparseMatrix::getRowGlobalElementCount ( ) const

Get the number of global rows

Returns: The number of global rows

Definition at line 1014 of file system_matrix.cpp.

◆ getRowGlobalElementOffset()

long bitpit::SparseMatrix::getRowGlobalElementOffset ( ) const

Get global row offset.

Returns: The global row offset.

Definition at line 1026 of file system_matrix.cpp.

◆ getRowGlobalOffset()

long bitpit::SparseMatrix::getRowGlobalOffset ( ) const

Get global row offset.

Returns: The global row offset.

Definition at line 1004 of file system_matrix.cpp.

◆ getRowNZCount()

long bitpit::SparseMatrix::getRowNZCount ( long row ) const

Get the number of non-zero blocks/elements in the specified row.

Returns: The number of non-zero blocks/elements in the specified row.

Definition at line 866 of file system_matrix.cpp.

◆ getRowNZElementCount()

long bitpit::SparseMatrix::getRowNZElementCount ( long row ) const

Get the number of non-zero elements in the specified row.

This is the number of individual non-zero elements, NOT the number of non-zero blocks.

Returns: The number of non-zero elements in the specified row.

Definition at line 918 of file system_matrix.cpp.

◆ getRowPattern() [1/2]

ConstProxyVector< long > bitpit::SparseMatrix::getRowPattern ( long row ) const

Get the pattern of the specified row.

Parameters

row	is the row

Returns: The pattern of the specified row.

Definition at line 1260 of file system_matrix.cpp.

◆ getRowPattern() [2/2]

void bitpit::SparseMatrix::getRowPattern	(	long	row,
		ConstProxyVector< long > *	pattern ) const

Get the pattern of the specified row.

Parameters

row	is the row
pattern	on output will contain the pattern of the specified row

Definition at line 1274 of file system_matrix.cpp.

◆ getRowPatternData() [1/2]

long * bitpit::SparseMatrix::getRowPatternData ( long row )

protected

Get a constant pointer to the internal pattern of the specified row.

Parameters

row	is the row

Returns: A constant pointer to the internal pattern of the specified row.

Definition at line 1318 of file system_matrix.cpp.

◆ getRowPatternData() [2/2]

const long * bitpit::SparseMatrix::getRowPatternData ( long row ) const

protected

Get a constant pointer to the internal pattern of the specified row.

Parameters

row	is the row

Returns: A constant pointer to the internal pattern of the specified row.

Definition at line 1329 of file system_matrix.cpp.

◆ getRowValues() [1/2]

ConstProxyVector< double > bitpit::SparseMatrix::getRowValues ( long row ) const

Get the values of the specified row.

Parameters

row	is the row

Returns: The values of the specified row.

Definition at line 1287 of file system_matrix.cpp.

◆ getRowValues() [2/2]

void bitpit::SparseMatrix::getRowValues	(	long	row,
		ConstProxyVector< double > *	values ) const

Get the values of the specified row.

Parameters

row	is the row
values	on output will contain the values of the specified row

Definition at line 1301 of file system_matrix.cpp.

◆ getRowValuesData() [1/2]

double * bitpit::SparseMatrix::getRowValuesData ( long row )

protected

Get a constant pointer to the internal values of the specified row.

The data of the row is stored using a block-row-major order: the rows of the single block elements are stored consecutively:

  <row_1_block_1><row_1_block_2>...<row_2_block_1><row_2_block_2>...

Parameters

row	is the row

Returns: A constant pointer to the internal values of the specified row.

Definition at line 1350 of file system_matrix.cpp.

◆ getRowValuesData() [2/2]

const double * bitpit::SparseMatrix::getRowValuesData ( long row ) const

protected

Get a constant pointer to the internal values of the specified row.

The data of the row is stored using a block-row-major order: the rows of the single block elements are stored consecutively:

  <row_1_block_1><row_1_block_2>...<row_2_block_1><row_2_block_2>...

Parameters

row	is the row

Returns: A constant pointer to the internal values of the specified row.

Definition at line 1366 of file system_matrix.cpp.

◆ initialize() [1/4]

void bitpit::SparseMatrix::initialize	(	bool	partitioned,
		int	blockSize,
		long	nRows,
		long	nCols,
		long	nNZ )

Initialize the pattern.

Parameters

partitioned	controls if the matrix is partitioned
blockSize	is the block size of the matrix
nRows	is the number rows of the matrix, if the matrix is partitioned this is the number of local rows
nCols	is the number columns of the matrix, if the matrix is partitioned this is the number of local columns
nNZ	is the number of non-zero blocks that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 300 of file system_matrix.cpp.

◆ initialize() [2/4]

void bitpit::SparseMatrix::initialize	(	bool	partitioned,
		long	nRows,
		long	nCols,
		long	nNZ )

Initialize the pattern.

Parameters

partitioned	controls if the matrix is partitioned
nRows	is the number rows of the matrix, if the matrix is partitioned this is the number of local rows
nCols	is the number columns of the matrix, if the matrix is partitioned this is the number of local columns
nNZ	is the number of non-zero elements that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 280 of file system_matrix.cpp.

◆ initialize() [3/4]

void bitpit::SparseMatrix::initialize	(	int	blockSize,
		long	nRows,
		long	nCols,
		long	nNZ )

Initialize the pattern.

Parameters

blockSize	is the block size of the matrix
nRows	is the number of rows of the matrix
nCols	is the number of columns of the matrix
nNZ	is the number of non-zero blocks that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 334 of file system_matrix.cpp.

◆ initialize() [4/4]

void bitpit::SparseMatrix::initialize	(	long	nRows,
		long	nCols,
		long	nNZ )

Initialize the pattern.

Parameters

nRows	is the number of rows of the matrix
nCols	is the number of columns of the matrix
nNZ	is the number of non-zero elements that the matrix will contain. If this number is unknown, an estimate (or zero) could be passed. If the actual number of non-zero elements turns out to be greater than the provided value, the initialization of the matrix will be slower because reallocation of internal data may be needed

Definition at line 317 of file system_matrix.cpp.

◆ initializePatternStorage()

void bitpit::SparseMatrix::initializePatternStorage ( )

protected

Initialize the storage for the pattern.

Definition at line 641 of file system_matrix.cpp.

◆ initializeValueStorage()

void bitpit::SparseMatrix::initializeValueStorage ( )

protected

Initialize the storage for the values.

Definition at line 683 of file system_matrix.cpp.

◆ isAssembled()

bool bitpit::SparseMatrix::isAssembled ( ) const

Check if the matrix is assembled and ready for use.

Returns: Returns true if the matrix is assembled and ready for use.

Definition at line 769 of file system_matrix.cpp.

◆ isPartitioned()

bool bitpit::SparseMatrix::isPartitioned ( ) const

Checks if the matrix is partitioned.

Returns: Returns true if the patch is partitioned, false otherwise.

Definition at line 945 of file system_matrix.cpp.

◆ squeeze()

void bitpit::SparseMatrix::squeeze ( )

Squeeze.

Requests the matrix to reduce its capacity to fit its size.

Definition at line 460 of file system_matrix.cpp.

◆ squeezePatternStorage()

void bitpit::SparseMatrix::squeezePatternStorage ( )

protected

Squeeze the storage for the pattern.

Requests the pattern storage to reduce its capacity to fit its size.

Definition at line 665 of file system_matrix.cpp.

◆ squeezeValueStorage()

void bitpit::SparseMatrix::squeezeValueStorage ( )

protected

Squeeze the storage for the values.

Requests the value storage to reduce its capacity to fit its size.

Definition at line 707 of file system_matrix.cpp.

Member Data Documentation

◆ m_assembled

bool bitpit::SparseMatrix::m_assembled

protected

Definition at line 141 of file system_matrix.hpp.

◆ m_blockSize

int bitpit::SparseMatrix::m_blockSize

protected

Definition at line 132 of file system_matrix.hpp.

◆ m_communicator

MPI_Comm bitpit::SparseMatrix::m_communicator

protected

Definition at line 145 of file system_matrix.hpp.

◆ m_global_colOffset

long bitpit::SparseMatrix::m_global_colOffset

protected

Definition at line 152 of file system_matrix.hpp.

◆ m_global_maxRowNZ

long bitpit::SparseMatrix::m_global_maxRowNZ

protected

Definition at line 150 of file system_matrix.hpp.

◆ m_global_nCols

long bitpit::SparseMatrix::m_global_nCols

protected

Definition at line 148 of file system_matrix.hpp.

◆ m_global_nNZ

long bitpit::SparseMatrix::m_global_nNZ

protected

Definition at line 149 of file system_matrix.hpp.

◆ m_global_nRows

long bitpit::SparseMatrix::m_global_nRows

protected

Definition at line 147 of file system_matrix.hpp.

◆ m_global_rowOffset

long bitpit::SparseMatrix::m_global_rowOffset

protected

Definition at line 151 of file system_matrix.hpp.

◆ m_lastRow

long bitpit::SparseMatrix::m_lastRow

protected

Definition at line 139 of file system_matrix.hpp.

◆ m_maxRowNZ

long bitpit::SparseMatrix::m_maxRowNZ

protected

Definition at line 137 of file system_matrix.hpp.

◆ m_nCols

long bitpit::SparseMatrix::m_nCols

protected

Definition at line 135 of file system_matrix.hpp.

◆ m_nNZ

long bitpit::SparseMatrix::m_nNZ

protected

Definition at line 136 of file system_matrix.hpp.

◆ m_nRows

long bitpit::SparseMatrix::m_nRows

protected

Definition at line 134 of file system_matrix.hpp.

◆ m_partitioned

bool bitpit::SparseMatrix::m_partitioned

protected

Definition at line 144 of file system_matrix.hpp.

◆ m_pattern

FlatVector2D<long> bitpit::SparseMatrix::m_pattern

protected

Definition at line 155 of file system_matrix.hpp.

◆ m_values

std::vector<double> bitpit::SparseMatrix::m_values

protected

Definition at line 156 of file system_matrix.hpp.

The documentation for this class was generated from the following files:

src/LA/system_matrix.hpp
src/LA/system_matrix.cpp

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Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ SparseMatrix() [1/7]

◆ SparseMatrix() [2/7]

◆ SparseMatrix() [3/7]

◆ SparseMatrix() [4/7]

◆ SparseMatrix() [5/7]

◆ SparseMatrix() [6/7]

◆ SparseMatrix() [7/7]

◆ ~SparseMatrix()

Member Function Documentation

◆ addRow() [1/2]

◆ addRow() [2/2]

◆ assembly()

◆ clear()

◆ clearPatternStorage()

◆ clearValueStorage()

◆ computeTranspose()

◆ countAddedRows()

◆ countMissingRows()

◆ display()

◆ extractGhostGlobalCols()

◆ extractGhostGlobalRows()

◆ extractLocalGlobalCols()

◆ extractLocalGlobalRows()

◆ getBlockSize()

◆ getColCount()

◆ getColElementCount()

◆ getColGlobalCount()

◆ getColGlobalElementCount()

◆ getColGlobalElementOffset()

◆ getColGlobalOffset()

◆ getCommunicator()

◆ getMaxRowNZCount()

◆ getMaxRowNZElementCount()

◆ getMaxRowNZGlobalCount()

◆ getMaxRowNZGlobalElementCount()

◆ getNZCount()

◆ getNZElementCount()

◆ getNZGlobalCount()

◆ getNZGlobalElementCount()

◆ getRowCount()

◆ getRowElementCount()

◆ getRowGlobalCount()

◆ getRowGlobalElementCount()

◆ getRowGlobalElementOffset()

◆ getRowGlobalOffset()

◆ getRowNZCount()

◆ getRowNZElementCount()

◆ getRowPattern() [1/2]

◆ getRowPattern() [2/2]

◆ getRowPatternData() [1/2]

◆ getRowPatternData() [2/2]

◆ getRowValues() [1/2]

◆ getRowValues() [2/2]

◆ getRowValuesData() [1/2]

◆ getRowValuesData() [2/2]

◆ initialize() [1/4]

◆ initialize() [2/4]

◆ initialize() [3/4]

◆ initialize() [4/4]

◆ initializePatternStorage()

◆ initializeValueStorage()

◆ isAssembled()

◆ isPartitioned()

◆ squeeze()

◆ squeezePatternStorage()

◆ squeezeValueStorage()

Member Data Documentation

◆ m_assembled

◆ m_blockSize

◆ m_communicator

◆ m_global_colOffset

◆ m_global_maxRowNZ

◆ m_global_nCols

◆ m_global_nNZ