The POD (Proper Orthogonal Decomposition) class provides an interface for defining POD object. More...

Inheritance diagram for bitpit::POD:

Collaboration diagram for bitpit::POD:

Public Types
enum class	ErrorMode { COMBINED , SINGLE , NONE }
	Mode of Error evaluation of a reconstructed fields by the POD basis. More...

enum class	MemoryMode { MEMORY_NORMAL , MEMORY_LIGHT }
	Memory Mode of the POD object. It defines the use of the memory resources. More...

enum class	MeshType { UNDEFINED , VOLOCTREE }
	Type of the Mesh used to compute the POD basis. More...

enum class	ReconstructionMode { PROJECTION , MINIMIZATION }
	Mode of Reconstruction of fields by using the POD basis. More...

enum class	RunMode { RESTORE , COMPUTE }
	Run Mode of the POD object. It defines if the POD basis has to be computed or restored. More...

enum class	WriteMode { DUMP , DEBUG , NONE }
	Output Write Mode of the POD object. It defines the amount of information written by the POD object. More...

Public Member Functions
	POD (MPI_Comm comm=MPI_COMM_WORLD)

	POD (POD &&other)=default

	~POD ()

void	adaptionAlter (const std::vector< adaption::Info > &info)

void	adaptionCleanUp (const std::vector< adaption::Info > &info)

void	adaptionPrepare (const std::vector< adaption::Info > &info)

void	addReconstructionSnapshot (const pod::SnapshotFile &file)

void	addReconstructionSnapshot (const std::string &directory, const std::string &name)

void	addSnapshot (const pod::SnapshotFile &file)

void	addSnapshot (const std::string &directory, const std::string &name)

void	clear ()

void	computeMapper (const VolumeKernel *mesh)

void	dump ()

void	dumpDecomposition ()

void	dumpField (const std::string &name, const pod::PODField &field) const

void	evalCorrelation ()

void	evalDecomposition ()

void	evalEigen ()

void	evalErrorBoundingBox ()

void	evalMeanMesh ()

void	evalModes ()

void	evalReconstruction ()

std::vector< double >	fieldsl2norm (pod::PODField &snap)

std::vector< double >	fieldsMax (pod::PODField &snap)

void	fillListActiveIDs (const PiercedStorage< bool > &bfield)

const std::string &	getDirectory ()

double	getEnergyLevel ()

ErrorMode	getErrorMode ()

double	getErrorThreshold ()

std::vector< std::string >	getFieldsNames ()

std::unique_ptr< PODKernel > &	getKernel ()

const std::unordered_set< long int > &	getListActiveIDs ()

std::size_t	getListIDInternalCount ()

const pod::PODMode &	getMean ()

MemoryMode	getMemoryMode ()

const VolumeKernel *	getMesh ()

MeshType	getMeshType ()

std::size_t	getModeCount ()

const std::vector< pod::PODMode > &	getModes ()

const std::string &	getName ()

std::vector< std::vector< double > >	getReconstructionCoeffs ()

ReconstructionMode	getReconstructionMode ()

RunMode	getRunMode ()

std::vector< std::string >	getScalarNames ()

std::size_t	getSnapshotCount ()

std::vector< std::array< std::string, 3 > >	getVectorNames ()

WriteMode	getWriteMode ()

void	leave1out ()

std::vector< std::vector< double > >	projectField (pod::PODField &field)

void	readSnapshot (const pod::SnapshotFile &snap, pod::PODField &fieldr)

void	reconstructFields (const std::vector< std::vector< double > > &coeffMatrix, pod::PODField &recon)

void	reconstructFields (PiercedStorage< double > &fields, VolumeKernel mesh, std::map< std::string, std::size_t > targetFields, const std::unordered_set< long > targetCells)

void	reconstructFields (pod::PODField &field, pod::PODField &recon)

void	removeLeave1outSnapshot (const pod::SnapshotFile &file)

void	removeLeave1outSnapshot (const std::string &directory, const std::string &name)

void	restore ()

void	restoreDecomposition ()

void	run ()

void	setDirectory (const std::string &directory)

void	setEnergyLevel (double energy)

void	setErrorMode (ErrorMode mode)

void	setErrorThreshold (double threshold)

void	setExpert (bool mode=true)

void	setMemoryMode (MemoryMode mode)

void	setMesh (const pod::SnapshotFile &file)

void	setMesh (const std::string &directory, const std::string &name)

void	setMesh (std::unique_ptr< VolumeKernel > &&mesh)

void	setMeshType (MeshType type)

void	setModeCount (std::size_t nmodes)

void	setName (const std::string &name)

void	setReconstructionMode (ReconstructionMode mode)

void	setRunMode (RunMode mode)

void	setSensorMask (const PiercedStorage< bool > &mask, VolumeKernel *mesh=nullptr)

void	setSnapshots (const std::vector< pod::SnapshotFile > &database)

void	setStaticMesh (bool flag)

void	setTargetErrorFields (const std::vector< std::string > &namesf, const std::vector< std::array< std::string, 3 > > &namevf)

void	setUseMean (bool flag)

void	setWriteMode (WriteMode mode)

void	unsetLeave1outSnapshots ()

void	write (const pod::PODField &snap, std::string file_name) const

void	write (int mode_index, std::string file_name)

Public Member Functions inherited from bitpit::VTKBaseStreamer
virtual void	absorbData (std::fstream &, const std::string &, VTKFormat, uint64_t, uint8_t, VTKDataType)

virtual void	flushData (std::fstream &, const std::string &, VTKFormat)

template<typename T>
void	flushValue (std::fstream &, VTKFormat, const T &value) const

template<typename T>
void	flushValue (std::fstream &, VTKFormat, const T *values, int nValues) const

Detailed Description

The POD (Proper Orthogonal Decomposition) class provides an interface for defining POD object.

POD is the base class for defining POD object.
This class provides the interface methods, as the base get/set methods.
To execute a pod work-flow of a POD object call the method run().

Note: in this version the only allowed mesh type is VolOctree. All the database fields and the reconstructed ones have to be defined on the same domain.

Examples: POD_application_example_00001.cpp, POD_example_00001.cpp, POD_example_00002.cpp, POD_example_00003.cpp, POD_example_00004.cpp, and POD_example_00005.cpp.

Definition at line 41 of file pod.hpp.

Member Enumeration Documentation

◆ ErrorMode

enum class bitpit::POD::ErrorMode

strong

Mode of Error evaluation of a reconstructed fields by the POD basis.

Enumerator
COMBINED	Maximum of reconstruction errors.
SINGLE	Reconstruction errors one at a time.
NONE	No error evaluation.

Definition at line 86 of file pod.hpp.

◆ MemoryMode

enum class bitpit::POD::MemoryMode

strong

Memory Mode of the POD object. It defines the use of the memory resources.

Enumerator
MEMORY_NORMAL	Normal use of the memory. The POD modes are stored in memory till the POD object is destroyed.
MEMORY_LIGHT	Light use of memory. The POD modes are not stored but they are read from file when needed.

Definition at line 49 of file pod.hpp.

◆ MeshType

enum class bitpit::POD::MeshType

strong

Type of the Mesh used to compute the POD basis.

Enumerator
UNDEFINED	Undefined mesh type. Note: not allowed to run POD computing.
VOLOCTREE	VolOctree mesh type.

Definition at line 96 of file pod.hpp.

◆ ReconstructionMode

enum class bitpit::POD::ReconstructionMode

strong

Mode of Reconstruction of fields by using the POD basis.

Enumerator
PROJECTION	Orthogonal projection of a field over the POD basis. Note: if the POD modes are not orthogonal on the active domain this is an approximation.
MINIMIZATION	Non-orthogonal projection of a field over the POD basis.Note: if the POD modes are orthogonal on the active domain the result obtained by using PROJECTION is the same.

Definition at line 77 of file pod.hpp.

◆ RunMode

enum class bitpit::POD::RunMode

strong

Run Mode of the POD object. It defines if the POD basis has to be computed or restored.

Enumerator
RESTORE	Restore the POD basis from dumped file.
COMPUTE	Compute the POD basis.

Definition at line 58 of file pod.hpp.

◆ WriteMode

enum class bitpit::POD::WriteMode

strong

Output Write Mode of the POD object. It defines the amount of information written by the POD object.

Enumerator
DUMP	Write (dump) only the files needed to restore the POD instance.
DEBUG	Write files to debug the run (POD dumping files, POD basis in .vtu format, database fields in .vtu format, reconstrucetd fields in .vtu format...) .
NONE	Write none.

Definition at line 67 of file pod.hpp.

Constructor & Destructor Documentation

◆ POD() [1/2]

bitpit::POD::POD ( MPI_Comm comm = MPI_COMM_WORLD )

Creates a new POD object.

Parameters

[in] comm The MPI communicator used by the pod object. MPI_COMM_WORLD is the default value.

Definition at line 67 of file pod.cpp.

◆ ~POD()

bitpit::POD::~POD ( )

Destructor of POD

Definition at line 117 of file pod.cpp.

◆ POD() [2/2]

bitpit::POD::POD ( POD && other )

default

Default copy constructor.

Parameters

[in] other Input POD object

Member Function Documentation

◆ adaptionAlter()

void bitpit::POD::adaptionAlter ( const std::vector< adaption::Info > & info )

Update the mapping pre-computed of an input mesh to the POD mesh by the info given after an adaptation of the input mesh. Can be called only if expert mode is active.

Parameters

[in] info Info vector result of adaptation of the input mesh

Definition at line 2951 of file pod.cpp.

◆ adaptionCleanUp()

void bitpit::POD::adaptionCleanUp ( const std::vector< adaption::Info > & info )

Clean up the pre-computed internal structures of mapping.

Parameters

[in] info Info vector result of adaptation prepare of the input mesh

Definition at line 2992 of file pod.cpp.

◆ adaptionPrepare()

void bitpit::POD::adaptionPrepare ( const std::vector< adaption::Info > & info )

Prepare the pre-computed mapping of an input mesh to the POD mesh by the info given before an adaptation of the input mesh (internal method).

Parameters

[in] info Info vector result of adaptation prepare of the input mesh

Definition at line 2973 of file pod.cpp.

◆ addReconstructionSnapshot() [1/2]

void bitpit::POD::addReconstructionSnapshot ( const pod::SnapshotFile & file )

Add a snapshot to the reconstruction database.

Parameters

[in] file is the file name (complete path) of the snapshot.

Definition at line 293 of file pod.cpp.

◆ addReconstructionSnapshot() [2/2]

void bitpit::POD::addReconstructionSnapshot	(	const std::string &	directory,
		const std::string &	name )

Add a snapshot to the reconstruction database.

Parameters

[in]	directory	is the directory that contains the snapshot.
[in]	name	is the name of the snapshot.

Examples: POD_application_example_00001.cpp.

Definition at line 282 of file pod.cpp.

◆ addSnapshot() [1/2]

void bitpit::POD::addSnapshot ( const pod::SnapshotFile & file )

Add a snapshot to the POD database.

Parameters

[in] file is the file name (complete path) of the snapshot.

Definition at line 219 of file pod.cpp.

◆ addSnapshot() [2/2]

void bitpit::POD::addSnapshot	(	const std::string &	directory,
		const std::string &	name )

Add a snapshot to the POD database.

Parameters

[in]	directory	is the directory that contains the snapshot.
[in]	name	is the name of the snapshot.

Examples: POD_application_example_00001.cpp.

Definition at line 208 of file pod.cpp.

◆ clear()

void bitpit::POD::clear ( )

Cleaning POD

Definition at line 125 of file pod.cpp.

◆ computeMapper()

void bitpit::POD::computeMapper ( const VolumeKernel * mesh )

Compute the mapping of an input mesh to the POD mesh. Can be called only if expert mode is active.

Parameters

[in] mesh Pointer to input mesh

Definition at line 2938 of file pod.cpp.

◆ dump()

void bitpit::POD::dump ( )

Write the POD results by dumping.

Definition at line 854 of file pod.cpp.

◆ dumpDecomposition()

void bitpit::POD::dumpDecomposition ( )

Dump decomposition..

Definition at line 903 of file pod.cpp.

◆ dumpField()

void bitpit::POD::dumpField	(	const std::string &	name,
		const pod::PODField &	field ) const

Write snapshots by dumping.

Parameters

[in]	name	Filename.
[in]	field	Snapshot field.

Definition at line 2432 of file pod.cpp.

◆ evalCorrelation()

void bitpit::POD::evalCorrelation ( )

Evaluation of correlation matrix.

Definition at line 1344 of file pod.cpp.

◆ evalDecomposition()

void bitpit::POD::evalDecomposition ( )

Evaluate POD decomposition over a set of given snapshots.

Definition at line 872 of file pod.cpp.

◆ evalEigen()

void bitpit::POD::evalEigen ( )

Evaluation of eigenvalues and eigenvectors of the correlation matrix.

Definition at line 1972 of file pod.cpp.

◆ evalErrorBoundingBox()

void bitpit::POD::evalErrorBoundingBox ( )

Evaluation of error bounding box according to a certain threshold.

Examples: POD_application_example_00001.cpp.

Definition at line 1502 of file pod.cpp.

◆ evalMeanMesh()

void bitpit::POD::evalMeanMesh ( )

Evaluation of the mean field and the POD mesh, as the more refined envelope of the fluid domain between all the meshes related to the database snapshots. Currently implemented for static mesh only.

Definition at line 1199 of file pod.cpp.

◆ evalModes()

void bitpit::POD::evalModes ( )

Evaluation of POD modes.

Definition at line 2083 of file pod.cpp.

◆ evalReconstruction()

void bitpit::POD::evalReconstruction ( )

Evaluation of snapshots reconstruction. Use the reconstruction database to read the snapshots to be reconstructed.

Definition at line 1448 of file pod.cpp.

◆ fieldsl2norm()

std::vector< double > bitpit::POD::fieldsl2norm ( pod::PODField & snap )

Evaluate the l2-norm of a POD field.

Parameters

[in] snap Field as POD object.

Returns: The vector of the l2-norms.

Definition at line 2576 of file pod.cpp.

◆ fieldsMax()

std::vector< double > bitpit::POD::fieldsMax ( pod::PODField & snap )

Evaluate the maximum value of a POD field.

Parameters

[in] snap Field as POD object.

Returns: The vector of the maxima.

Definition at line 2617 of file pod.cpp.

◆ fillListActiveIDs()

void bitpit::POD::fillListActiveIDs ( const PiercedStorage< bool > & mask )

Fill list of active ID. Use boolean field passed as constant reference. Fill with internal and ghosts cells.

Parameters

[in] mask is the Reference to the boolean field used as filter/mask to chose the active cells.

Definition at line 1315 of file pod.cpp.

◆ getDirectory()

const std::string & bitpit::POD::getDirectory ( )

Get the directory to write/read POD results.

Returns: The name of the input/output object.

Definition at line 197 of file pod.cpp.

◆ getEnergyLevel()

double bitpit::POD::getEnergyLevel ( )

Get the percentage energy level of retained POD modes.

Returns: The energy level.

Examples: POD_application_example_00001.cpp.

Definition at line 336 of file pod.cpp.

◆ getErrorMode()

POD::ErrorMode bitpit::POD::getErrorMode ( )

Get the error mode of the POD object.

Returns: The error mode.

Examples: POD_application_example_00001.cpp.

Definition at line 647 of file pod.cpp.

◆ getErrorThreshold()

double bitpit::POD::getErrorThreshold ( )

Get the error threshold used in the subregion evaluation.

Returns: The threshold value.

Examples: POD_application_example_00001.cpp.

Definition at line 356 of file pod.cpp.

◆ getFieldsNames()

std::vector< std::string > bitpit::POD::getFieldsNames ( )

Get the names of the fields involved in the POD in one list (scalar fields and components of vector fields).

Returns: The names of fields.

Definition at line 748 of file pod.cpp.

◆ getKernel()

std::unique_ptr< PODKernel > & bitpit::POD::getKernel ( )

Get the reference to the POD kernel.

Definition at line 823 of file pod.cpp.

◆ getListActiveIDs()

const std::unordered_set< long > & bitpit::POD::getListActiveIDs ( )

Get the IDs of active cells.

Examples: POD_example_00005.cpp.

Definition at line 807 of file pod.cpp.

◆ getListIDInternalCount()

std::size_t bitpit::POD::getListIDInternalCount ( )

Get the number of internal cells in the list of IDs of active cells.

Definition at line 815 of file pod.cpp.

◆ getMean()

const pod::PODMode & bitpit::POD::getMean ( )

Get a reference to the POD mean field.

Returns: The const reference to the POD mean field.

Definition at line 779 of file pod.cpp.

◆ getMemoryMode()

POD::MemoryMode bitpit::POD::getMemoryMode ( )

Get the memory mode of the POD object.

Examples: POD_application_example_00001.cpp.

Definition at line 529 of file pod.cpp.

◆ getMesh()

const VolumeKernel * bitpit::POD::getMesh ( )

Get a pointer to the POD mesh.

Returns: The const pointer to the POD mesh.

Definition at line 766 of file pod.cpp.

◆ getMeshType()

POD::MeshType bitpit::POD::getMeshType ( )

Get the type of the POD mesh.

Returns: Type of the POD mesh.

Definition at line 469 of file pod.cpp.

◆ getModeCount()

std::size_t bitpit::POD::getModeCount ( )

Get the number of POD modes.

Returns: The number of POD modes.

Examples: POD_application_example_00001.cpp, and POD_example_00005.cpp.

Definition at line 315 of file pod.cpp.

◆ getModes()

const std::vector< pod::PODMode > & bitpit::POD::getModes ( )

Get a reference to the POD modes.

Returns: The const reference to the POD modes.

Examples: POD_example_00005.cpp.

Definition at line 789 of file pod.cpp.

◆ getName()

const std::string & bitpit::POD::getName ( )

Get the name of the pod object.

Returns: The name of the POD object.

Examples: POD_application_example_00001.cpp.

Definition at line 170 of file pod.cpp.

◆ getReconstructionCoeffs()

std::vector< std::vector< double > > bitpit::POD::getReconstructionCoeffs ( )

Get the POD coefficients of the last reconstructed field.

Returns: The POD modal coefficients of the last reconstructed field.

Definition at line 799 of file pod.cpp.

◆ getReconstructionMode()

POD::ReconstructionMode bitpit::POD::getReconstructionMode ( )

Get the reconstruction mode of the POD object.

Returns: The reconstruction mode.

Examples: POD_application_example_00001.cpp.

Definition at line 622 of file pod.cpp.

◆ getRunMode()

POD::RunMode bitpit::POD::getRunMode ( )

Get the execution mode of the POD object.

Examples: POD_application_example_00001.cpp.

Definition at line 565 of file pod.cpp.

◆ getScalarNames()

std::vector< std::string > bitpit::POD::getScalarNames ( )

Get the names of the scalar fields involved in the POD.

Returns: The names of scalar fields.

Definition at line 727 of file pod.cpp.

◆ getSnapshotCount()

std::size_t bitpit::POD::getSnapshotCount ( )

Get the number of snapshots in the database.

Returns: The number of snapshots.

Definition at line 717 of file pod.cpp.

◆ getVectorNames()

std::vector< std::array< std::string, 3 > > bitpit::POD::getVectorNames ( )

Get the names of the vector fields (three components) involved in the POD.

Returns: The names of vector fields.

Definition at line 737 of file pod.cpp.

◆ getWriteMode()

POD::WriteMode bitpit::POD::getWriteMode ( )

Get the write mode of the POD object.

Examples: POD_application_example_00001.cpp.

Definition at line 586 of file pod.cpp.

◆ leave1out()

void bitpit::POD::leave1out ( )

Execution of leave-one-out procedure.

Examples: POD_application_example_00001.cpp.

Definition at line 1120 of file pod.cpp.

◆ projectField()

std::vector< std::vector< double > > bitpit::POD::projectField ( pod::PODField & field )

Perform L2 projection of a filed over the POD space generated by the POD modes.

Parameters

	[in/out]	POD Field object.
[out]	matrix	of size N_fields x N_modes with the coefficients of the L2 projection.

Definition at line 1763 of file pod.cpp.

◆ readSnapshot()

void bitpit::POD::readSnapshot	(	const pod::SnapshotFile &	snap,
		pod::PODField &	fieldr )

Read a snapshot from file defined on a given mesh.

Parameters

[in]	snap	Snapshot filename
[out]	fieldr	Resulting POD field

Definition at line 2149 of file pod.cpp.

◆ reconstructFields() [1/3]

void bitpit::POD::reconstructFields	(	const std::vector< std::vector< double > > &	reconstructionCoeffs,
		pod::PODField &	reconi )

Field reconstruction.

Parameters

[in]	field	Original field (Note: it has to be defined on POD mesh).
[out]	reconi	Reconstructed field.

Definition at line 1651 of file pod.cpp.

◆ reconstructFields() [2/3]

void bitpit::POD::reconstructFields	(	PiercedStorage< double > &	fields,
		VolumeKernel *	mesh,
		std::map< std::string, std::size_t >	targetFields,
		const std::unordered_set< long > *	targetCells )

Field reconstruction.

Parameters

[in,out]	fields	Original field used in the reconstruction. Only the values of `targetCells` are updated.
[in]	mesh	Pointer to snapshot field
[in]	targetFields	Map of names/ids of fields in PiercedStorage to reconstruct
[in]	targetCells	Pointer to list of cell to be updated with the reconstructed values (optional, default whole field).

Definition at line 1666 of file pod.cpp.

◆ reconstructFields() [3/3]

void bitpit::POD::reconstructFields	(	pod::PODField &	field,
		pod::PODField &	reconi )

Field reconstruction.

Parameters

[in]	field	Original field (Note: it has to be defined on POD mesh).
[out]	reconi	Reconstructed field.

Definition at line 1630 of file pod.cpp.

◆ removeLeave1outSnapshot() [1/2]

void bitpit::POD::removeLeave1outSnapshot ( const pod::SnapshotFile & file )

Remove a snapshot from the leave-1-out error computation.

Parameters

[in] file is the file name (complete path) of the snapshot.

Definition at line 254 of file pod.cpp.

◆ removeLeave1outSnapshot() [2/2]

void bitpit::POD::removeLeave1outSnapshot	(	const std::string &	directory,
		const std::string &	name )

Remove a snapshot from the leave-1-out error computation.

Parameters

[in]	directory	is the directory that contains the snapshot.
[in]	name	is the name of the snapshot.

Examples: POD_application_example_00001.cpp.

Definition at line 243 of file pod.cpp.

◆ restore()

void bitpit::POD::restore ( )

Restore the POD results.

Examples: POD_example_00002.cpp, and POD_example_00005.cpp.

Definition at line 863 of file pod.cpp.

◆ restoreDecomposition()

void bitpit::POD::restoreDecomposition ( )

Restore the decomposition.

Definition at line 1050 of file pod.cpp.

◆ run()

void bitpit::POD::run ( )

Execution of POD procedure. Currently it computes the complete POD for static mesh: mean field of the snapshots, correlation matrix, POD modes and reconstruction of database fields with the retained modes. Some reconstruction errors are evaluated (not yet).

Examples: POD_application_example_00001.cpp.

Definition at line 835 of file pod.cpp.

◆ setDirectory()

void bitpit::POD::setDirectory ( const std::string & directory )

Set the input/output directory.

Parameters

[in] directory is the name of the directory.

Examples: POD_application_example_00001.cpp, POD_example_00002.cpp, and POD_example_00005.cpp.

Definition at line 180 of file pod.cpp.

◆ setEnergyLevel()

void bitpit::POD::setEnergyLevel ( double energy )

Set the energy percentage level (e%) used to retain a limited number of POD modes during POD evaluation. m_nModes such that sum(lambda[1:m_nModes])/etot >= e% and sum(lambda[1:m_nModes-1])/etot < e%.

Parameters

[in] energy is the target energy percentage level.

Examples: POD_application_example_00001.cpp.

Definition at line 326 of file pod.cpp.

◆ setErrorMode()

void bitpit::POD::setErrorMode ( POD::ErrorMode mode )

Set the error evaluation mode of the POD object.

Parameters

[in] mode is the error mode. If set to COMBINED evaluates the maximum reconstruction errors, if set to SINGLE evaluates the reconstruction errors one at a time, if set to NONE does nothing.

Examples: POD_application_example_00001.cpp.

Definition at line 634 of file pod.cpp.

◆ setErrorThreshold()

void bitpit::POD::setErrorThreshold ( double threshold )

Set the minimum error threshold used to identify a subregion of the original computational domain.

Parameters

[in] threshold is the threshold value for the minimum error.

Examples: POD_application_example_00001.cpp.

Definition at line 346 of file pod.cpp.

◆ setExpert()

void bitpit::POD::setExpert ( bool mode = true )

Set expert mode for the POD object.

Parameters

[in]

mode

Expert mode active flag. If expert mode is active same features have to be manually controlled:

a pre-computed mapping between a mesh field and the POD mesh is not automatically re-computed when reconstructed (use computeMapper method)

Definition at line 659 of file pod.cpp.

◆ setMemoryMode()

void bitpit::POD::setMemoryMode ( POD::MemoryMode mode )

Set the memory mode of the POD object.

Parameters

[in] mode Memory mode. If set to MEMORY_LIGHT the POD modes if present are erased and then they are read from file if needed. If set to MEMORY_NORMAL, the POD modes are kept in memory when computed or read for the first time.

Examples: POD_application_example_00001.cpp.

Definition at line 504 of file pod.cpp.

◆ setMesh() [1/3]

void bitpit::POD::setMesh ( const pod::SnapshotFile & file )

Set the POD mesh by reading it from file, where the fields and modes are defined. The POD mesh is not computed during POD run. The file has to be a snapshot file format (data file + mesh file).

Parameters

[in] file is the file name of the snapshot (complete path directory+name).

Definition at line 455 of file pod.cpp.

◆ setMesh() [2/3]

void bitpit::POD::setMesh	(	const std::string &	directory,
		const std::string &	name )

Set the POD mesh by reading it from file, where the fields and modes are defined. The POD mesh is not computed during POD run. The file has to be a snapshot file format (data file + mesh file).

Parameters

[in]	directory	is the directory that contains the snapshot.
[in]	name	is the name of the snapshot.

Examples: POD_application_example_00001.cpp.

Definition at line 442 of file pod.cpp.

◆ setMesh() [3/3]

void bitpit::POD::setMesh ( std::unique_ptr< VolumeKernel > && mesh )

Set the POD mesh, where the fields and modes are defined. The POD mesh is not computed during POD run.

Parameters

[in] mesh Pointer to POD mesh.

Definition at line 418 of file pod.cpp.

◆ setMeshType()

void bitpit::POD::setMeshType ( POD::MeshType type )

Set the type of the POD mesh, where the fields and modes are defined. Note: even if the mesh is directly set by setMesh methods, the type MUST be set before call setMesh.

Parameters

[in] type Type of the POD mesh.

Examples: POD_application_example_00001.cpp.

Definition at line 389 of file pod.cpp.

◆ setModeCount()

void bitpit::POD::setModeCount ( std::size_t nmodes )

Set the number of retained POD modes during POD evaluation.

Parameters

[in] nmodes Number of retained modes.

Examples: POD_application_example_00001.cpp.

Definition at line 304 of file pod.cpp.

◆ setName()

void bitpit::POD::setName ( const std::string & name )

Set the name of the pod object.

Parameters

[in] name is the name that will be set.

Examples: POD_application_example_00001.cpp, POD_example_00002.cpp, and POD_example_00005.cpp.

Definition at line 160 of file pod.cpp.

◆ setReconstructionMode()

void bitpit::POD::setReconstructionMode ( POD::ReconstructionMode mode )

Set the reconstruction mode of the POD object.

Parameters

[in] mode is the reconstruction mode. If set to MINIMIZATION solve the least-squares problem, if set to PROJECTION uses orthogonal projection.

Examples: POD_application_example_00001.cpp.

Definition at line 597 of file pod.cpp.

◆ setRunMode()

void bitpit::POD::setRunMode ( POD::RunMode mode )

Set the run mode of the POD object.

Parameters

[in] mode is the run mode. If set to COMPUTE POD modes, mean field and POD mesh are computed during execute command, if set to RESTORE they are restored from file.

Examples: POD_application_example_00001.cpp.

Definition at line 541 of file pod.cpp.

◆ setSensorMask()

void bitpit::POD::setSensorMask	(	const PiercedStorage< bool > &	mask,
		VolumeKernel *	mesh = nullptr )

Set the boolean field used as mask for the POD reconstruction.

Parameters

[in]	mask	Reference to boolean field used as mask to chose the active cells.
[in]	mesh	Pointer to mesh related to input mask (used only if dynamic mesh active). If set to true, the corresponding cell is used during the minimization [or projection], otherwise it is discarded.

Definition at line 671 of file pod.cpp.

◆ setSnapshots()

void bitpit::POD::setSnapshots ( const std::vector< pod::SnapshotFile > & database )

Set the snapshots of the POD database.

Parameters

[in] database Vector of snapshot file names.

Definition at line 230 of file pod.cpp.

◆ setStaticMesh()

void bitpit::POD::setStaticMesh ( bool flag )

Set if the mesh, where the fields are defined, is a static mesh, fixed for the whole database, or it is an AMR mesh, i.e. differently adapted for each field in the database or during reconstruction.

Parameters

[in] flag if set to true the mesh is considered static.

Examples: POD_application_example_00001.cpp.

Definition at line 482 of file pod.cpp.

◆ setTargetErrorFields()

void bitpit::POD::setTargetErrorFields	(	const std::vector< std::string > &	namesf,
		const std::vector< std::array< std::string, 3 > > &	namevf )

Set the target error fields used in the error bounding box evaluation.

Parameters

[in]	namesf	is the vector of scalar fields names.
[in]	namevf	is the vector of vector fields names, arranged in vector components.

Examples: POD_application_example_00001.cpp.

Definition at line 367 of file pod.cpp.

◆ setUseMean()

void bitpit::POD::setUseMean ( bool flag )

Set if the mean fields are used during the POD basis calculation or not.

Parameters

[in] flag if set to true the mean is used.

Examples: POD_application_example_00001.cpp, and POD_example_00005.cpp.

Definition at line 492 of file pod.cpp.

◆ setWriteMode()

void bitpit::POD::setWriteMode ( POD::WriteMode mode )

Set the write mode of the POD object.

Parameters

[in] mode is the write mode.

Examples: POD_application_example_00001.cpp, and POD_example_00005.cpp.

Definition at line 575 of file pod.cpp.

◆ unsetLeave1outSnapshots()

void bitpit::POD::unsetLeave1outSnapshots ( )

Unset the snapshots of the leave-1-out.

Definition at line 262 of file pod.cpp.

◆ write() [1/2]

void bitpit::POD::write	(	const pod::PODField &	field,
		std::string	file_name ) const

Write a POD Field as VTK files.

Parameters

[in]	field,PODField	object.
[in]	file_name,string	with the desired file name for the VTK file.

Definition at line 3079 of file pod.cpp.

◆ write() [2/2]

void bitpit::POD::write	(	int	mode_index,
		std::string	file_name )

Write a POD Mode as VTK files.

Parameters

[in]	int,mode	index.
[in]	file_name,string	with the desired file name for the VTK file.

Definition at line 3153 of file pod.cpp.

The documentation for this class was generated from the following files:

src/POD/pod.hpp
src/POD/pod.cpp

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Public Types

Public Member Functions

Detailed Description

Member Enumeration Documentation

◆ ErrorMode

◆ MemoryMode

◆ MeshType

◆ ReconstructionMode

◆ RunMode

◆ WriteMode

Constructor & Destructor Documentation

◆ POD() [1/2]

◆ ~POD()

◆ POD() [2/2]

Member Function Documentation

◆ adaptionAlter()

◆ adaptionCleanUp()

◆ adaptionPrepare()

◆ addReconstructionSnapshot() [1/2]

◆ addReconstructionSnapshot() [2/2]

◆ addSnapshot() [1/2]

◆ addSnapshot() [2/2]

◆ clear()

◆ computeMapper()

◆ dump()

◆ dumpDecomposition()

◆ dumpField()

◆ evalCorrelation()

◆ evalDecomposition()

◆ evalEigen()

◆ evalErrorBoundingBox()

◆ evalMeanMesh()

◆ evalModes()

◆ evalReconstruction()

◆ fieldsl2norm()

◆ fieldsMax()

◆ fillListActiveIDs()

◆ getDirectory()

◆ getEnergyLevel()

◆ getErrorMode()

◆ getErrorThreshold()

◆ getFieldsNames()

◆ getKernel()

◆ getListActiveIDs()

◆ getListIDInternalCount()

◆ getMean()

◆ getMemoryMode()

◆ getMesh()

◆ getMeshType()

◆ getModeCount()

◆ getModes()

◆ getName()

◆ getReconstructionCoeffs()

◆ getReconstructionMode()

◆ getRunMode()

◆ getScalarNames()

◆ getSnapshotCount()

◆ getVectorNames()

◆ getWriteMode()

◆ leave1out()

◆ projectField()

◆ readSnapshot()

◆ reconstructFields() [1/3]

◆ reconstructFields() [2/3]

◆ reconstructFields() [3/3]

◆ removeLeave1outSnapshot() [1/2]

◆ removeLeave1outSnapshot() [2/2]

◆ restore()

◆ restoreDecomposition()

◆ run()

◆ setDirectory()

◆ setEnergyLevel()

◆ setErrorMode()

◆ setErrorThreshold()

◆ setExpert()

◆ setMemoryMode()

◆ setMesh() [1/3]

◆ setMesh() [2/3]

◆ setMesh() [3/3]