The VolUnstructured class defines a dummy unstructured volume patch. More...
Public Member Functions | |
VolUnstructured (int dimension, MPI_Comm communicator, std::size_t haloSize=1) | |
VolUnstructured (int id, int dimension, MPI_Comm communicator, std::size_t haloSize=1) | |
VolUnstructured (MPI_Comm communicator, std::size_t haloSize=1) | |
std::unique_ptr< PatchKernel > | clone () const override |
double | evalCellSize (long id) const override |
double | evalCellVolume (long id) const override |
double | evalInterfaceArea (long id) const override |
std::array< double, 3 > | evalInterfaceNormal (long id) const override |
bool | isPointInside (const std::array< double, 3 > &point) const override |
virtual bool | isPointInside (const std::array< double, 3 > &point) const=0 |
bool | isPointInside (double x, double y, double z) const |
bool | isPointInside (long id, const std::array< double, 3 > &point) const override |
virtual bool | isPointInside (long id, const std::array< double, 3 > &point) const=0 |
bool | isPointInside (long id, double x, double y, double z) const |
long | locatePoint (const std::array< double, 3 > &point) const override |
virtual long | locatePoint (const std::array< double, 3 > &point) const=0 |
long | locatePoint (double x, double y, double z) const |
void | setExpert (bool expert) |
Public Member Functions inherited from bitpit::VolumeKernel | |
bool | areFaceVerticesOrdered (const Cell &cell, int face) const |
void | extractEnvelope (SurfaceKernel &envelope) const |
int | getFaceOrderedLocalVertex (const Cell &cell, int face, std::size_t n) const |
ConstProxyVector< long > | getFaceOrderedVertexIds (const Cell &cell, int face) const |
int | getLineCodimension () const override |
int | getPointCodimension () const override |
int | getSurfaceCodimension () const override |
int | getVolumeCodimension () const override |
bool | isPointInside (double x, double y, double z) const |
bool | isPointInside (long id, double x, double y, double z) const |
Public Member Functions inherited from bitpit::PatchKernel | |
PatchKernel (PatchKernel &&other) | |
virtual | ~PatchKernel () |
std::vector< adaption::Info > | adaption (bool trackAdaption=true, bool squeezeStorage=false) |
std::vector< adaption::Info > | adaptionAlter (bool trackAdaption=true, bool squeezeStorage=false) |
void | adaptionCleanup () |
std::vector< adaption::Info > | adaptionPrepare (bool trackAdaption=true) |
CellIterator | addCell (Cell &&source, int owner, int haloLayer, long id=Element::NULL_ID) |
CellIterator | addCell (Cell &&source, int owner, long id=Element::NULL_ID) |
CellIterator | addCell (Cell &&source, long id=Element::NULL_ID) |
CellIterator | addCell (const Cell &source, int owner, int haloLayer, long id=Element::NULL_ID) |
CellIterator | addCell (const Cell &source, int owner, long id=Element::NULL_ID) |
CellIterator | addCell (const Cell &source, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, const std::vector< long > &connectivity, int owner, int haloLayer, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, const std::vector< long > &connectivity, int owner, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, int owner, int haloLayer, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, int owner, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, long id=Element::NULL_ID) |
CellIterator | addCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID) |
InterfaceIterator | addInterface (const Interface &source, long id=Element::NULL_ID) |
InterfaceIterator | addInterface (ElementType type, const std::vector< long > &connectivity, long id=Element::NULL_ID) |
InterfaceIterator | addInterface (ElementType type, long id=Element::NULL_ID) |
InterfaceIterator | addInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id=Element::NULL_ID) |
InterfaceIterator | addInterface (Interface &&source, long id=Element::NULL_ID) |
VertexIterator | addVertex (const std::array< double, 3 > &coords, long id=Vertex::NULL_ID) |
VertexIterator | addVertex (const Vertex &source, long id=Vertex::NULL_ID) |
VertexIterator | addVertex (Vertex &&source, long id=Vertex::NULL_ID) |
bool | areAdjacenciesDirty (bool global=false) const |
bool | areInterfacesDirty (bool global=false) const |
bool | arePartitioningInfoDirty (bool global=true) const |
void | buildAdjacencies () |
void | buildInterfaces () |
CellIterator | cellBegin () |
CellConstIterator | cellConstBegin () const |
CellConstIterator | cellConstEnd () const |
CellIterator | cellEnd () |
std::vector< long > | collapseCoincidentVertices () |
void | consecutiveRenumber (long offsetVertices, long offsetCells, long offsetInterfaces) |
void | consecutiveRenumberCells (long offset=0) |
void | consecutiveRenumberInterfaces (long offset=0) |
void | consecutiveRenumberVertices (long offset=0) |
long | countBorderCells () const |
long | countBorderFaces () const |
long | countBorderInterfaces () const |
long | countBorderVertices () const |
long | countDuplicateCells () const |
long | countFaces () const |
long | countFreeCells () const |
long | countFreeFaces () const |
long | countFreeInterfaces () const |
long | countFreeVertices () const |
long | countOrphanCells () const |
long | countOrphanInterfaces () const |
long | countOrphanVertices () const |
bool | deleteCell (long id) |
template<typename IdStorage > | |
bool | deleteCells (const IdStorage &ids) |
bool | deleteCoincidentVertices () |
bool | deleteInterface (long id) |
template<typename IdStorage > | |
bool | deleteInterfaces (const IdStorage &ids) |
bool | deleteOrphanInterfaces () |
bool | deleteOrphanVertices () |
void | destroyAdjacencies () |
void | destroyInterfaces () |
void | displayCells (std::ostream &out, unsigned int padding=0) const |
void | displayInterfaces (std::ostream &out, unsigned int padding=0) const |
void | displayTopologyStats (std::ostream &out, unsigned int padding=0) const |
void | displayVertices (std::ostream &out, unsigned int padding=0) const |
bool | dump (std::ostream &stream) |
bool | dump (std::ostream &stream) const |
bool | empty (bool global=true) const |
void | enableCellBalancing (long id, bool enabled) |
virtual void | evalCellBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const |
virtual std::array< double, 3 > | evalCellCentroid (long id) const |
void | evalElementBoundingBox (const Element &element, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const |
std::array< double, 3 > | evalElementCentroid (const Element &element) const |
virtual void | evalInterfaceBoundingBox (long id, std::array< double, 3 > *minPoint, std::array< double, 3 > *maxPoint) const |
virtual std::array< double, 3 > | evalInterfaceCentroid (long id) const |
double | evalPartitioningUnbalance () const |
double | evalPartitioningUnbalance (const std::unordered_map< long, double > &cellWeights) const |
void | findCellEdgeNeighs (long id, bool complete, std::vector< long > *neighs) const |
std::vector< long > | findCellEdgeNeighs (long id, bool complete=true) const |
std::vector< long > | findCellEdgeNeighs (long id, int edge) const |
void | findCellEdgeNeighs (long id, int edge, std::vector< long > *neighs) const |
std::vector< long > | findCellFaceNeighs (long id) const |
std::vector< long > | findCellFaceNeighs (long id, int face) const |
void | findCellFaceNeighs (long id, int face, std::vector< long > *neighs) const |
void | findCellFaceNeighs (long id, std::vector< long > *neighs) const |
std::vector< long > | findCellNeighs (long id) const |
void | findCellNeighs (long id, int codimension, bool complete, std::vector< long > *neighs) const |
std::vector< long > | findCellNeighs (long id, int codimension, bool complete=true) const |
void | findCellNeighs (long id, std::vector< long > *neighs) const |
void | findCellVertexNeighs (long id, bool complete, std::vector< long > *neighs) const |
std::vector< long > | findCellVertexNeighs (long id, bool complete=true) const |
std::vector< long > | findCellVertexNeighs (long id, int vertex) const |
void | findCellVertexNeighs (long id, int vertex, std::vector< long > *neighs) const |
std::vector< long > | findCellVertexOneRing (long id, int vertex) const |
void | findCellVertexOneRing (long id, int vertex, std::vector< long > *neighs) const |
std::vector< long > | findDuplicateCells () const |
bool | findFaceNeighCell (long cellId, long neighId, int *cellFace, int *cellAdjacencyId) const |
std::vector< long > | findOrphanCells () const |
std::vector< long > | findOrphanInterfaces () const |
std::vector< long > | findOrphanVertices () |
std::vector< long > | findVertexOneRing (long vertexId) const |
void | findVertexOneRing (long vertexId, std::vector< long > *ring) const |
void | flushData (std::fstream &stream, const std::string &name, VTKFormat format) override |
AdaptionStatus | getAdaptionStatus (bool global=false) const |
AdjacenciesBuildStrategy | getAdjacenciesBuildStrategy () const |
void | getBoundingBox (bool global, std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const |
void | getBoundingBox (std::array< double, 3 > &minPoint, std::array< double, 3 > &maxPoint) const |
Cell & | getCell (long id) |
const Cell & | getCell (long id) const |
adaption::Marker | getCellAdaptionMarker (long id) |
CellConstIterator | getCellConstIterator (long id) const |
virtual long | getCellCount () const |
int | getCellHaloLayer (long id) const |
CellIterator | getCellIterator (long id) |
int | getCellOwner (long id) const |
int | getCellRank (long id) const |
PiercedVector< Cell > & | getCells () |
const PiercedVector< Cell > & | getCells () const |
virtual ElementType | getCellType (long id) const |
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > | getCellVertexCoordinates (long id) const |
void | getCellVertexCoordinates (long id, std::array< double, 3 > *coordinates) const |
void | getCellVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const |
const MPI_Comm & | getCommunicator () const |
int | getDimension () const |
int | getDumpVersion () const |
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > | getElementVertexCoordinates (const Element &element) const |
void | getElementVertexCoordinates (const Element &element, std::array< double, 3 > *coordinates) const |
void | getElementVertexCoordinates (const Element &element, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const |
Cell & | getFirstGhost () |
const Cell & | getFirstGhost () const |
Cell & | getFirstGhostCell () |
const Cell & | getFirstGhostCell () const |
Vertex & | getFirstGhostVertex () |
const Vertex & | getFirstGhostVertex () const |
long | getGhostCellCount () const |
const std::unordered_map< int, std::vector< long > > & | getGhostCellExchangeSources () const |
const std::vector< long > & | getGhostCellExchangeSources (int rank) const |
const std::unordered_map< int, std::vector< long > > & | getGhostCellExchangeTargets () const |
const std::vector< long > & | getGhostCellExchangeTargets (int rank) const |
long | getGhostCount () const |
const std::unordered_map< int BITPIT_COMMA std::vector< long > > & | getGhostExchangeSources () const |
const std::vector< long > & | getGhostExchangeSources (int rank) const |
const std::unordered_map< int BITPIT_COMMA std::vector< long > > & | getGhostExchangeTargets () const |
const std::vector< long > & | getGhostExchangeTargets (int rank) const |
long | getGhostVertexCount () const |
const std::unordered_map< int, std::vector< long > > & | getGhostVertexExchangeSources () const |
const std::vector< long > & | getGhostVertexExchangeSources (int rank) const |
const std::unordered_map< int, std::vector< long > > & | getGhostVertexExchangeTargets () const |
const std::vector< long > & | getGhostVertexExchangeTargets (int rank) const |
std::size_t | getHaloSize () const |
int | getId () const |
Interface & | getInterface (long id) |
const Interface & | getInterface (long id) const |
InterfaceConstIterator | getInterfaceConstIterator (long id) const |
virtual long | getInterfaceCount () const |
InterfaceIterator | getInterfaceIterator (long id) |
PiercedVector< Interface > & | getInterfaces () |
const PiercedVector< Interface > & | getInterfaces () const |
InterfacesBuildStrategy | getInterfacesBuildStrategy () const |
virtual ElementType | getInterfaceType (long id) const |
ConstProxyVector< std::array< double BITPIT_COMMA 3 > > | getInterfaceVertexCoordinates (long id) const |
void | getInterfaceVertexCoordinates (long id, std::array< double, 3 > *coordinates) const |
void | getInterfaceVertexCoordinates (long id, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const |
long | getInternalCellCount () const |
std::set< int > | getInternalCellPIDs () |
std::vector< long > | getInternalCellsByPID (int pid) |
long | getInternalCount () const |
long | getInternalVertexCount () const |
Cell & | getLastInternalCell () |
const Cell & | getLastInternalCell () const |
Vertex & | getLastInternalVertex () |
const Vertex & | getLastInternalVertex () const |
std::vector< int > | getNeighbourRanks () |
int | getOwner (bool allowDirty=false) const |
PartitioningStatus | getPartitioningStatus (bool global=false) const |
int | getProcessorCount () const |
int | getRank () const |
SpawnStatus | getSpawnStatus () const |
double | getTol () const |
Vertex & | getVertex (long id) |
const Vertex & | getVertex (long id) const |
VertexConstIterator | getVertexConstIterator (long id) const |
const std::array< double, 3 > & | getVertexCoords (long id) const |
void | getVertexCoords (std::size_t nVertices, const long *ids, std::array< double, 3 > *coordinates) const |
void | getVertexCoords (std::size_t nVertices, const long *ids, std::unique_ptr< std::array< double, 3 >[]> *coordinates) const |
virtual long | getVertexCount () const |
VertexIterator | getVertexIterator (long id) |
int | getVertexOwner (long id) const |
int | getVertexRank (long id) const |
PiercedVector< Vertex > & | getVertices () |
const PiercedVector< Vertex > & | getVertices () const |
VTKUnstructuredGrid & | getVTK () |
const CellConstRange | getVTKCellWriteRange () const |
WriteTarget | getVTKWriteTarget () const |
CellIterator | ghostBegin () |
CellIterator | ghostCell2InternalCell (long id) |
CellIterator | ghostCellBegin () |
CellConstIterator | ghostCellConstBegin () const |
CellConstIterator | ghostCellConstEnd () const |
CellIterator | ghostCellEnd () |
CellConstIterator | ghostConstBegin () const |
CellConstIterator | ghostConstEnd () const |
CellIterator | ghostEnd () |
VertexIterator | ghostVertexBegin () |
VertexConstIterator | ghostVertexConstBegin () const |
VertexConstIterator | ghostVertexConstEnd () const |
VertexIterator | ghostVertexEnd () |
void | initializeAdjacencies (AdjacenciesBuildStrategy strategy=ADJACENCIES_AUTOMATIC) |
void | initializeInterfaces (InterfacesBuildStrategy strategy=INTERFACES_AUTOMATIC) |
InterfaceIterator | interfaceBegin () |
InterfaceConstIterator | interfaceConstBegin () const |
InterfaceConstIterator | interfaceConstEnd () const |
InterfaceIterator | interfaceEnd () |
CellIterator | internalBegin () |
CellIterator | internalCell2GhostCell (long id, int owner, int haloLayer) |
CellIterator | internalCellBegin () |
CellConstIterator | internalCellConstBegin () const |
CellConstIterator | internalCellConstEnd () const |
CellIterator | internalCellEnd () |
CellConstIterator | internalConstBegin () const |
CellConstIterator | internalConstEnd () const |
CellIterator | internalEnd () |
VertexIterator | internalVertexBegin () |
VertexConstIterator | internalVertexConstBegin () const |
VertexConstIterator | internalVertexConstEnd () const |
VertexIterator | internalVertexEnd () |
bool | isAdaptionSupported () const |
bool | isBoundingBoxDirty (bool global=false) const |
bool | isCellAutoIndexingEnabled () const |
bool | isDirty (bool global=false) const |
bool | isDistributed (bool allowDirty=false) const |
bool | isExpert () const |
bool | isInterfaceAutoIndexingEnabled () const |
bool | isInterfaceOrphan (long id) const |
bool | isPartitioned () const |
bool | isPartitioningSupported () const |
bool | isRankNeighbour (int rank) |
bool | isThreeDimensional () const |
bool | isTolCustomized () const |
bool | isVertexAutoIndexingEnabled () const |
long | locatePoint (double x, double y, double z) const |
void | markCellForCoarsening (long id) |
void | markCellForRefinement (long id) |
PatchKernel & | operator= (PatchKernel &&other) |
std::vector< adaption::Info > | partition (bool trackPartitioning, bool squeezeStorage=false) |
std::vector< adaption::Info > | partition (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false) |
std::vector< adaption::Info > | partition (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false) |
std::vector< adaption::Info > | partition (MPI_Comm communicator, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1) |
std::vector< adaption::Info > | partition (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1) |
std::vector< adaption::Info > | partition (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, bool squeezeStorage=false, std::size_t haloSize=1) |
std::vector< adaption::Info > | partitioningAlter (bool trackPartitioning=true, bool squeezeStorage=false) |
void | partitioningCleanup () |
std::vector< adaption::Info > | partitioningPrepare (bool trackPartitioning) |
std::vector< adaption::Info > | partitioningPrepare (const std::unordered_map< long, double > &cellWeights, bool trackPartitioning) |
std::vector< adaption::Info > | partitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning) |
std::vector< adaption::Info > | partitioningPrepare (MPI_Comm communicator, bool trackPartitioning, std::size_t haloSize=1) |
std::vector< adaption::Info > | partitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, double > &cellWeights, bool trackPartitioning, std::size_t haloSize=1) |
std::vector< adaption::Info > | partitioningPrepare (MPI_Comm communicator, const std::unordered_map< long, int > &cellRanks, bool trackPartitioning, std::size_t haloSize=1) |
template<typename Function > | |
void | processCellFaceNeighbours (long seedId, int nLayers, Function function) const |
template<typename Selector , typename Function > | |
void | processCellFaceNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const |
template<typename Function > | |
void | processCellNeighbours (long seedId, int nLayers, Function function) const |
template<typename Selector , typename Function > | |
void | processCellNeighbours (long seedId, int nLayers, Selector isSelected, Function function) const |
template<typename Function , typename SeedContainer > | |
void | processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const |
template<typename Selector , typename Function , typename SeedContainer > | |
void | processCellsFaceNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const |
template<typename Function , typename SeedContainer > | |
void | processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Function function) const |
template<typename Selector , typename Function , typename SeedContainer > | |
void | processCellsNeighbours (const SeedContainer &seedIds, int nLayers, Selector isSelected, Function function) const |
bool | reserveCells (size_t nCells) |
bool | reserveInterfaces (size_t nInterfaces) |
bool | reserveVertices (size_t nVertices) |
virtual void | reset () |
void | resetCellAdaptionMarker (long id) |
virtual void | resetCells () |
virtual void | resetInterfaces () |
void | resetTol () |
virtual void | resetVertices () |
void | restore (std::istream &stream, bool reregister=false) |
virtual void | rotate (const std::array< double, 3 > &n0, const std::array< double, 3 > &n1, double angle) |
void | rotate (double n0x, double n0y, double n0z, double n1x, double n1y, double n1z, double angle) |
void | scale (const std::array< double, 3 > &scaling) |
virtual void | scale (const std::array< double, 3 > &scaling, const std::array< double, 3 > &origin) |
void | scale (double scaling) |
void | scale (double scaling, const std::array< double, 3 > &origin) |
void | scale (double sx, double sy, double sz) |
void | scale (double sx, double sy, double sz, const std::array< double, 3 > &origin) |
void | setCellAutoIndexing (bool enabled) |
virtual void | setDimension (int dimension) |
void | setHaloSize (std::size_t haloSize) |
void | setId (int id) |
void | setInterfaceAutoIndexing (bool enabled) |
virtual void | settleAdaptionMarkers () |
void | setTol (double tolerance) |
void | setVertexAutoIndexing (bool enabled) |
void | setVTKWriteTarget (WriteTarget targetCells) |
virtual void | simulateCellUpdate (const long id, adaption::Marker marker, std::vector< Cell > *virtualCells, PiercedVector< Vertex, long > *virtualVertices) const |
bool | sort () |
bool | sortCells () |
bool | sortInterfaces () |
bool | sortVertices () |
std::vector< adaption::Info > | spawn (bool trackSpawn) |
bool | squeeze () |
bool | squeezeCells () |
bool | squeezeInterfaces () |
bool | squeezeVertices () |
virtual void | translate (const std::array< double, 3 > &translation) |
void | translate (double sx, double sy, double sz) |
std::vector< adaption::Info > | update (bool trackAdaption=true, bool squeezeStorage=false) |
void | updateAdjacencies (bool forcedUpdated=false) |
void | updateBoundingBox (bool forcedUpdated=false) |
void | updateInterfaces (bool forcedUpdated=false) |
VertexIterator | vertexBegin () |
VertexConstIterator | vertexConstBegin () const |
VertexConstIterator | vertexConstEnd () const |
VertexIterator | vertexEnd () |
void | write (const std::string &name, VTKWriteMode mode, double time) |
void | write (const std::string &name, VTKWriteMode mode=VTKWriteMode::DEFAULT) |
void | write (VTKWriteMode mode, double time) |
void | write (VTKWriteMode mode=VTKWriteMode::DEFAULT) |
Public Member Functions inherited from bitpit::VTKBaseStreamer | |
virtual void | absorbData (std::fstream &, const std::string &, VTKFormat, uint64_t, uint8_t, VTKDataType) |
template<typename T > | |
void | flushValue (std::fstream &, VTKFormat, const T &value) const |
template<typename T > | |
void | flushValue (std::fstream &, VTKFormat, const T *values, int nValues) const |
Protected Member Functions | |
void | _dump (std::ostream &stream) const override |
int | _getDumpVersion () const override |
std::size_t | _getMaxHaloSize () override |
void | _restore (std::istream &stream) override |
Protected Member Functions inherited from bitpit::VolumeKernel | |
VolumeKernel (int dimension, MPI_Comm communicator, std::size_t haloSize, bool expert) | |
VolumeKernel (int id, int dimension, MPI_Comm communicator, std::size_t haloSize, bool expert) | |
VolumeKernel (MPI_Comm communicator, std::size_t haloSize, bool expert) | |
Protected Member Functions inherited from bitpit::PatchKernel | |
PatchKernel (const PatchKernel &other) | |
PatchKernel (int dimension, MPI_Comm communicator, std::size_t haloSize, bool expert) | |
PatchKernel (int id, int dimension, MPI_Comm communicator, std::size_t haloSize, bool expert) | |
PatchKernel (MPI_Comm communicator, std::size_t haloSize, bool expert) | |
virtual std::vector< adaption::Info > | _adaptionAlter (bool trackAdaption) |
virtual void | _adaptionCleanup () |
virtual std::vector< adaption::Info > | _adaptionPrepare (bool trackAdaption) |
virtual bool | _enableCellBalancing (long id, bool enabled) |
virtual void | _findCellEdgeNeighs (long id, int edge, const std::vector< long > *blackList, std::vector< long > *neighs) const |
virtual void | _findCellFaceNeighs (long id, int face, const std::vector< long > *blackList, std::vector< long > *neighs) const |
virtual void | _findCellNeighs (long id, const std::vector< long > *blackList, std::vector< long > *neighs) const |
virtual void | _findCellVertexNeighs (long id, int vertex, const std::vector< long > *blackList, std::vector< long > *neighs) const |
virtual std::vector< long > | _findGhostCellExchangeSources (int rank) |
virtual adaption::Marker | _getCellAdaptionMarker (long id) |
virtual long | _getCellNativeIndex (long id) const |
virtual bool | _markCellForCoarsening (long id) |
virtual bool | _markCellForRefinement (long id) |
virtual std::vector< adaption::Info > | _partitioningAlter (bool trackPartitioning) |
virtual void | _partitioningCleanup () |
virtual std::vector< adaption::Info > | _partitioningPrepare (const std::unordered_map< long, double > &cellWeights, double defaultWeight, bool trackPartitioning) |
virtual std::vector< adaption::Info > | _partitioningPrepare (const std::unordered_map< long, int > &cellRanks, bool trackPartitioning) |
virtual void | _resetAdjacencies (bool release) |
virtual bool | _resetCellAdaptionMarker (long id) |
virtual void | _resetInterfaces (bool release) |
virtual void | _resetTol () |
virtual void | _setHaloSize (std::size_t haloSize) |
virtual void | _setTol (double tolerance) |
virtual std::vector< adaption::Info > | _spawn (bool trackAdaption) |
virtual void | _updateAdjacencies () |
virtual void | _updateInterfaces () |
virtual void | _writeFinalize () |
virtual void | _writePrepare () |
void | addPointToBoundingBox (const std::array< double, 3 > &point) |
std::unordered_map< long, std::vector< long > > | binGroupVertices (const PiercedVector< Vertex > &vertices, int nBins) |
std::unordered_map< long, std::vector< long > > | binGroupVertices (int nBins) |
void | clearBoundingBox () |
template<typename item_t , typename id_t = long> | |
std::unordered_map< id_t, id_t > | consecutiveItemRenumbering (PiercedVector< item_t, id_t > &container, long offset) |
bool | deleteVertex (long id) |
template<typename IdStorage > | |
bool | deleteVertices (const IdStorage &ids) |
void | dumpCells (std::ostream &stream) const |
void | dumpInterfaces (std::ostream &stream) const |
void | dumpVertices (std::ostream &stream) const |
void | extractEnvelope (PatchKernel &envelope) const |
virtual int | findAdjoinNeighFace (const Cell &cell, int cellFace, const Cell &neigh) const |
AlterationFlags | getCellAlterationFlags (long id) const |
AlterationFlags | getInterfaceAlterationFlags (long id) const |
VertexIterator | ghostVertex2InternalVertex (long id) |
VertexIterator | internalVertex2GhostVertex (long id, int owner) |
bool | isBoundingBoxFrozen () const |
bool | isCommunicatorSet () const |
virtual bool | isSameFace (const Cell &cell_A, int face_A, const Cell &cell_B, int face_B) const |
template<typename item_t , typename id_t = long> | |
void | mappedItemRenumbering (PiercedVector< item_t, id_t > &container, const std::unordered_map< id_t, id_t > &renumberMap) |
PatchKernel & | operator= (const PatchKernel &other)=delete |
void | pruneStaleAdjacencies () |
void | pruneStaleInterfaces () |
void | removePointFromBoundingBox (const std::array< double, 3 > &point) |
void | resetAdjacencies () |
void | resetCellAlterationFlags (long id, AlterationFlags flags=FLAG_NONE) |
void | resetInterfaceAlterationFlags (long id, AlterationFlags flags=FLAG_NONE) |
CellIterator | restoreCell (ElementType type, std::unique_ptr< long[]> &&connectStorage, int owner, int haloLayer, long id) |
void | restoreCells (std::istream &stream) |
InterfaceIterator | restoreInterface (ElementType type, std::unique_ptr< long[]> &&connectStorage, long id) |
void | restoreInterfaces (std::istream &stream) |
VertexIterator | restoreVertex (const std::array< double, 3 > &coords, int owner, long id) |
void | restoreVertices (std::istream &stream) |
void | setAdaptionStatus (AdaptionStatus status) |
void | setAdjacenciesBuildStrategy (AdjacenciesBuildStrategy status) |
void | setBoundingBox (const std::array< double, 3 > &minPoint, const std::array< double, 3 > &maxPoint) |
void | setBoundingBoxDirty (bool dirty) |
void | setBoundingBoxFrozen (bool frozen) |
void | setCellAlterationFlags (AlterationFlags flags) |
void | setCellAlterationFlags (long id, AlterationFlags flags) |
virtual void | setCommunicator (MPI_Comm communicator) |
void | setExpert (bool expert) |
void | setInterfaceAlterationFlags (AlterationFlags flags) |
void | setInterfaceAlterationFlags (long id, AlterationFlags flags) |
void | setInterfacesBuildStrategy (InterfacesBuildStrategy status) |
void | setPartitioned (bool partitioned) |
void | setPartitioningStatus (PartitioningStatus status) |
void | setSpawnStatus (SpawnStatus status) |
bool | testAlterationFlags (AlterationFlags availableFlags, AlterationFlags requestedFlags) const |
bool | testCellAlterationFlags (long id, AlterationFlags flags) const |
bool | testInterfaceAlterationFlags (long id, AlterationFlags flags) const |
void | unsetCellAlterationFlags (AlterationFlags flags) |
void | unsetCellAlterationFlags (long id, AlterationFlags flags) |
void | unsetInterfaceAlterationFlags (AlterationFlags flags) |
void | unsetInterfaceAlterationFlags (long id, AlterationFlags flags) |
void | updateFirstGhostCellId () |
void | updateFirstGhostVertexId () |
void | updateLastInternalCellId () |
void | updateLastInternalVertexId () |
Additional Inherited Members | |
Public Types inherited from bitpit::PatchKernel | |
enum | AdaptionStatus { ADAPTION_UNSUPPORTED = -1 , ADAPTION_CLEAN , ADAPTION_DIRTY , ADAPTION_PREPARED , ADAPTION_ALTERED } |
enum | AdjacenciesBuildStrategy { ADJACENCIES_NONE = -1 , ADJACENCIES_AUTOMATIC } |
typedef PiercedVector< Cell >::const_iterator | CellConstIterator |
typedef PiercedVector< Cell >::const_range | CellConstRange |
typedef PiercedVector< Cell >::iterator | CellIterator |
typedef PiercedVector< Cell >::range | CellRange |
typedef PiercedVector< Interface >::const_iterator | InterfaceConstIterator |
typedef PiercedVector< Interface >::const_range | InterfaceConstRange |
typedef PiercedVector< Interface >::iterator | InterfaceIterator |
typedef PiercedVector< Interface >::range | InterfaceRange |
enum | InterfacesBuildStrategy { INTERFACES_NONE = -1 , INTERFACES_AUTOMATIC } |
enum | PartitioningStatus { PARTITIONING_UNSUPPORTED = -1 , PARTITIONING_CLEAN , PARTITIONING_PREPARED , PARTITIONING_ALTERED } |
enum | SpawnStatus { SPAWN_UNNEEDED = -1 , SPAWN_NEEDED , SPAWN_DONE } |
typedef PiercedVector< Vertex >::const_iterator | VertexConstIterator |
typedef PiercedVector< Vertex >::const_range | VertexConstRange |
typedef PiercedVector< Vertex >::iterator | VertexIterator |
typedef PiercedVector< Vertex >::range | VertexRange |
enum | WriteTarget { WRITE_TARGET_CELLS_ALL , WRITE_TARGET_CELLS_INTERNAL } |
Static Public Member Functions inherited from bitpit::PatchKernel | |
template<typename patch_t > | |
static std::unique_ptr< patch_t > | clone (const patch_t *original) |
Protected Types inherited from bitpit::PatchKernel | |
typedef uint16_t | AlterationFlags |
typedef std::unordered_map< long, AlterationFlags > | AlterationFlagsStorage |
Protected Attributes inherited from bitpit::PatchKernel | |
AlterationFlagsStorage | m_alteredCells |
AlterationFlagsStorage | m_alteredInterfaces |
PiercedVector< Cell > | m_cells |
PiercedVector< Interface > | m_interfaces |
PiercedVector< Vertex > | m_vertices |
Static Protected Attributes inherited from bitpit::PatchKernel | |
static const double | DEFAULT_PARTITIONING_WEIGTH = 1. |
static const AlterationFlags | FLAG_ADJACENCIES_DIRTY = (1u << 1) |
static const AlterationFlags | FLAG_DANGLING = (1u << 3) |
static const AlterationFlags | FLAG_DELETED = (1u << 0) |
static const AlterationFlags | FLAG_INTERFACES_DIRTY = (1u << 2) |
static const AlterationFlags | FLAG_NONE = 0x0 |
The VolUnstructured class defines a dummy unstructured volume patch.
VolUnstructured defines a dummy unstructured volume patch. This is just a dummy interface, the real implementation will come in a future release.
Definition at line 35 of file volunstructured.hpp.
bitpit::VolUnstructured::VolUnstructured | ( | MPI_Comm | communicator, |
std::size_t | haloSize = 1 ) |
Creates an uninitialized partitioned patch.
If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.
communicator | is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created |
haloSize | is the size, expressed in number of layers, of the ghost cells halo |
Definition at line 56 of file volunstructured.cpp.
bitpit::VolUnstructured::VolUnstructured | ( | int | dimension, |
MPI_Comm | communicator, | ||
std::size_t | haloSize = 1 ) |
Creates a patch.
If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.
dimension | is the dimension of the patch |
communicator | is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created |
haloSize | is the size, expressed in number of layers, of the ghost cells halo |
Definition at line 83 of file volunstructured.cpp.
bitpit::VolUnstructured::VolUnstructured | ( | int | id, |
int | dimension, | ||
MPI_Comm | communicator, | ||
std::size_t | haloSize = 1 ) |
Creates a patch.
If a null comunicator is provided, a serial patch will be created, this means that each processor will be unaware of the existence of the other processes.
id | is the id of the patch |
dimension | is the dimension of the patch |
communicator | is the communicator to be used for exchanging data among the processes. If a null comunicator is provided, a serial patch will be created |
haloSize | is the size, expressed in number of layers, of the ghost cells halo |
Definition at line 113 of file volunstructured.cpp.
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overrideprotectedvirtual |
Write the patch to the specified stream.
stream | is the stream to write to |
Implements bitpit::PatchKernel.
Definition at line 264 of file volunstructured.cpp.
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overrideprotectedvirtual |
Get the version associated to the binary dumps.
Implements bitpit::PatchKernel.
Definition at line 252 of file volunstructured.cpp.
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overrideprotectedvirtual |
Gets the maximum allowed size, expressed in number of layers, of the ghost cells halo.
Reimplemented from bitpit::PatchKernel.
Definition at line 353 of file volunstructured.cpp.
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overrideprotectedvirtual |
Restore the patch from the specified stream.
stream | is the stream to read from |
Implements bitpit::PatchKernel.
Definition at line 281 of file volunstructured.cpp.
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overridevirtual |
Creates a clone of the pach.
Implements bitpit::PatchKernel.
Definition at line 133 of file volunstructured.cpp.
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overridevirtual |
Evaluates the characteristic size of the specified cell.
id | is the id of the cell |
Implements bitpit::PatchKernel.
Definition at line 180 of file volunstructured.cpp.
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overridevirtual |
Evaluates the volume of the specified cell.
id | is the id of the cell |
Implements bitpit::VolumeKernel.
Definition at line 158 of file volunstructured.cpp.
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overridevirtual |
Evaluates the area of the specified interface.
id | is the id of the interface |
Implements bitpit::VolumeKernel.
Definition at line 198 of file volunstructured.cpp.
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overridevirtual |
Evaluates the normal of the specified interface.
id | is the id of the interface |
Implements bitpit::VolumeKernel.
Definition at line 220 of file volunstructured.cpp.
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overridevirtual |
Checks if the specified point is inside the patch.
[in] | point | is the point to be checked |
Implements bitpit::VolumeKernel.
Definition at line 299 of file volunstructured.cpp.
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virtual |
Implements bitpit::VolumeKernel.
bool bitpit::VolumeKernel::isPointInside | ( | double | x, |
double | y, | ||
double | z ) const |
Checks if the specified point is inside the patch.
[in] | x | is the x coordinate of the point |
[in] | y | is the y coordinate of the point |
[in] | z | is the z coordinate of the point |
Definition at line 43 of file volume_kernel.cpp.
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overridevirtual |
Checks if the specified point is inside a cell.
[in] | id | is the idof the cell |
[in] | point | is the point to be checked |
Implements bitpit::VolumeKernel.
Definition at line 315 of file volunstructured.cpp.
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virtual |
Implements bitpit::VolumeKernel.
bool bitpit::VolumeKernel::isPointInside | ( | long | id, |
double | x, | ||
double | y, | ||
double | z ) const |
Checks if the specified point is inside a cell.
[in] | id | is the index of the cells |
[in] | x | is the x coordinate of the point |
[in] | y | is the y coordinate of the point |
[in] | z | is the z coordinate of the point |
Definition at line 45 of file volume_kernel.cpp.
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overridevirtual |
Locates the cell the contains the point.
If the point is not inside the patch, the function returns the id of the null element.
[in] | point | is the point to be checked |
Implements bitpit::PatchKernel.
Definition at line 336 of file volunstructured.cpp.
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virtual |
Implements bitpit::PatchKernel.
long bitpit::PatchKernel::locatePoint | ( | double | x, |
double | y, | ||
double | z ) const |
Locates the cell the contains the point.
If the point is not inside the patch, the function returns the id of the null element.
[in] | x | is the x coordinate of the point |
[in] | y | is the y coordinate of the point |
[in] | z | is the z coordinate of the point |
Definition at line 637 of file patch_kernel.cpp.
void bitpit::VolUnstructured::setExpert | ( | bool | expert | ) |
Enables or disables expert mode.
When expert mode is enabled, it will be possible to change the patch using low level functions (e.g., it will be possible to add individual cells, add vertices, delete cells, ...).
expert | if true, the expert mode will be enabled |
Definition at line 147 of file volunstructured.cpp.